Gross Chromosomal Rearrangement at Centromeres

被引:1
作者
Xu, Ran [1 ,2 ]
Pan, Ziyi [1 ,2 ]
Nakagawa, Takuro [1 ,2 ]
机构
[1] Osaka Univ, Grad Sch Sci, Dept Biol Sci, 1-1 Machikaneyama, Toyonaka, Osaka 5600043, Japan
[2] Osaka Univ, Forefront Res Ctr, Grad Sch Sci, 1-1 Machikaneyama, Toyonaka, Osaka 5600043, Japan
关键词
centromere; DNA repeat; heterochromatin; CENP-A; DNA recombination; DNA repair; gross chromosomal rearrangement; fission yeast; humans; isochromosome; DOUBLE-STRAND BREAKS; H3; LYSINE-9; METHYLATION; REPLICATION PROTEIN-A; DNA-DAMAGE RESPONSE; CENP-A; HOMOLOGOUS RECOMBINATION; HISTONE H3; FISSION YEAST; MITOTIC RECOMBINATION; RAD54; PROTEIN;
D O I
10.3390/biom14010028
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Centromeres play essential roles in the faithful segregation of chromosomes. CENP-A, the centromere-specific histone H3 variant, and heterochromatin characterized by di- or tri-methylation of histone H3 9th lysine (H3K9) are the hallmarks of centromere chromatin. Contrary to the epigenetic marks, DNA sequences underlying the centromere region of chromosomes are not well conserved through evolution. However, centromeres consist of repetitive sequences in many eukaryotes, including animals, plants, and a subset of fungi, including fission yeast. Advances in long-read sequencing techniques have uncovered the complete sequence of human centromeres containing more than thousands of alpha satellite repeats and other types of repetitive sequences. Not only tandem but also inverted repeats are present at a centromere. DNA recombination between centromere repeats can result in gross chromosomal rearrangement (GCR), such as translocation and isochromosome formation. CENP-A chromatin and heterochromatin suppress the centromeric GCR. The key player of homologous recombination, Rad51, safeguards centromere integrity through conservative noncrossover recombination between centromere repeats. In contrast to Rad51-dependent recombination, Rad52-mediated single-strand annealing (SSA) and microhomology-mediated end-joining (MMEJ) lead to centromeric GCR. This review summarizes recent findings on the role of centromere and recombination proteins in maintaining centromere integrity and discusses how GCR occurs at centromeres.
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共 213 条
[1]   Human HLTF mediates postreplication repair by its HIRAN domain-dependent replication fork remodelling [J].
Achar, Yathish Jagadheesh ;
Balogh, David ;
Neculai, Dante ;
Juhasz, Szilvia ;
Morocz, Monika ;
Gali, Himabindu ;
Dhe-Paganon, Sirano ;
Venclovas, Ceslovas ;
Haracska, Lajos .
NUCLEIC ACIDS RESEARCH, 2015, 43 (21) :10277-10291
[2]   A novel motif of Rad51 serves as an interaction hub for recombination auxiliary factors [J].
Afshar, Negar ;
Argunhan, Bilge ;
Palihati, Maierdan ;
Taniguchi, Goki ;
Tsubouchi, Hideo ;
Iwasaki, Hiroshi .
ELIFE, 2021, 10 :1-33
[3]   ATP-dependent and independent functions of Rad54 in genome maintenance [J].
Agarwal, Sheba ;
van Cappellen, Wiggert A. ;
Guenole, Aude ;
Eppink, Berina ;
Linsen, Sam E. V. ;
Meijering, Erik ;
Houtsmuller, Adriaan ;
Kanaar, Roland ;
Essers, Jeroen .
JOURNAL OF CELL BIOLOGY, 2011, 192 (05) :735-750
[4]   Dark Matter of Primate Genomes: Satellite DNA Repeats and Their Evolutionary Dynamics [J].
Ahmad, Syed Farhan ;
Singchat, Worapong ;
Jehangir, Maryam ;
Suntronpong, Aorarat ;
Panthum, Thitipong ;
Malaivijitnond, Suchinda ;
Srikulnath, Kornsorn .
CELLS, 2020, 9 (12)
[5]   PHF2 regulates homology-directed DNA repair by controlling the resection of DNA double strand breaks [J].
Alonso-de Vega, Ignacio ;
Paz-Cabrera, Maria Cristina ;
Rother, Magdalena B. ;
Wiegant, Wouter W. ;
Checa-Rodriguez, Cintia ;
Hernandez-Fernaud, Juan Ramon ;
Huertas, Pablo ;
Freire, Raimundo ;
van Attikum, Haico ;
Smits, Veronique A. J. .
NUCLEIC ACIDS RESEARCH, 2020, 48 (09) :4915-4927
[6]   Complete genomic and epigenetic maps of human centromeres [J].
Altemose, Nicolas ;
Logsdon, Glennis A. ;
Bzikadze, Andrey, V ;
Sidhwani, Pragya ;
Langley, Sasha A. ;
Caldas, Gina, V ;
Hoyt, Savannah J. ;
Uralsky, Lev ;
Ryabov, Fedor D. ;
Shew, Colin J. ;
Sauria, Michael E. G. ;
Borchers, Matthew ;
Gershman, Ariel ;
Mikheenko, Alla ;
Shepelev, Valery A. ;
Dvorkina, Tatiana ;
Kunyavskaya, Olga ;
Vollger, Mitchell R. ;
Rhie, Arang ;
McCartney, Ann M. ;
Asri, Mobin ;
Lorig-Roach, Ryan ;
Shafin, Kishwar ;
Lucas, Julian K. ;
Aganezov, Sergey ;
Olson, Daniel ;
de Lima, Leonardo Gomes ;
Potapova, Tamara ;
Hartley, Gabrielle A. ;
Haukness, Marina ;
Kerpedjiev, Peter ;
Gusev, Fedor ;
Tigyi, Kristof ;
Brooks, Shelise ;
Young, Alice ;
Nurk, Sergey ;
Koren, Sergey ;
Salama, Sofie R. ;
Paten, Benedict ;
Rogaev, Evgeny, I ;
Streets, Aaron ;
Karpen, Gary H. ;
Dernburg, Abby F. ;
Sullivan, Beth A. ;
Straight, Aaron F. ;
Wheeler, Travis J. ;
Gerton, Jennifer L. ;
Eichler, Evan E. ;
Phillippy, Adam M. ;
Timp, Winston .
SCIENCE, 2022, 376 (6588) :56-+
[7]   The CENP-S complex is essential for the stable assembly of outer kinetochore structure [J].
Amano, Miho ;
Suzuki, Aussie ;
Hori, Tetsuya ;
Backer, Chelsea ;
Okawa, Katsuya ;
Cheeseman, Iain M. ;
Fukagawa, Tatsuo .
JOURNAL OF CELL BIOLOGY, 2009, 186 (02) :173-182
[8]   Cnd2 has dual roles in mitotic condensation and interphase [J].
Aono, N ;
Sutani, T ;
Tomonaga, T ;
Mochida, S ;
Yanagida, M .
NATURE, 2002, 417 (6885) :197-202
[9]   Tandemly repeated genes promote RNAi-mediated heterochromatin formation via an antisilencing factor, Epe1, in fission yeast [J].
Asanuma, Takahiro ;
Inagaki, Soichi ;
Kakutani, Tetsuji ;
Aburatani, Hiroyuki ;
Murakami, Yota .
GENES & DEVELOPMENT, 2022, 36 (21-24) :1145-1159
[10]   DNA double-strand breaks promote methylation of histone H3 on lysine 9 and transient formation of repressive chromatin [J].
Ayrapetov, Marina K. ;
Gursoy-Yuzugullu, Ozge ;
Xu, Chang ;
Xu, Ye ;
Price, Brendan D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (25) :9169-9174