Salinilacihabitans rarus gen. nov., sp. nov., Natrononativus amylolyticus gen. nov., sp. nov., Natronobeatus ordinarius gen. nov., sp. nov., and Halovivax gelatinilyticus sp. nov., halophilic archaea, isolated from a salt lake and soda lakes

被引:6
作者
Li, Xin-Xin [1 ]
Tan, Shun [1 ]
Cheng, Mu [1 ]
Hu, Yao [1 ]
Ma, Xue [1 ]
Hou, Jing [1 ]
Cui, Heng-Lin [1 ]
机构
[1] Jiangsu Univ, Sch Food & Biol Engn, 301 Xuefu Rd, Zhenjiang 212013, Peoples R China
基金
中国国家自然科学基金;
关键词
Halophilic archaea; Natrialbaceae; Novel genera and species; Salt lake; Soda lake; FAMILY HALOBACTERIACEAE; SEQUENCES; GENERA; MEMBER;
D O I
10.1007/s00792-023-01303-5
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Four halophilic archaea strains, AD-4(T), CGA30(T), CGA73(T), and WLHSJ27(T), were isolated from a salt lake and two soda lakes located in different regions of China. The 16S rRNA and rpoB & PRIME; gene sequence similarities among strains AD-4(T), CGA30(T), CGA73(T), WLHSJ27(T), and the current species of the family Natrialbaceae were 90.9-97.5% and 83.1-91.8%, respectively. The phylogenetic and phylogenomic analyses revealed that these four strains separated from existing genera in the family Natrialbaceae and formed distant branches. The ANI, isDDH, and AAI values among these four strains and the current members of the family Natrialbaceae were 72-79%, 20-25%, and 63-73%, respectively, much lower than the threshold values for species demarcation. Strains AD-4(T), CGA73(T), and WLHSJ27(T) may represent three novel genera of the family Natrialbaceae according to the cutoff value of AAI (& LE; 76%) proposed to differentiate genera within the family Natrialbaceae. These four strains could be distinguished from the related genera according to differential phenotypic characteristics. The major phospholipids of these four strains were identical while their glycolipid profiles were diverse. DGD-1 is a major glycolipid found in strain AD-4(T), trace glycolipids, DGD-1, and S-DGD-1, and (or) S-TGD-1 was found in the other three strains. The major respiratory quinones detected in the four strains were menaquinone MK-8 and MK-8(H-2). This polyphasic classification indicated that strains AD-4(T), CGA73(T), and WLHSJ27(T) represent three novel species of three new genera with the family Natrialbaceae, and strain CGA30(T) represents a novel species of Halovivax.
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页数:10
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共 33 条
[1]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[2]   Natrinema halophilum sp. nov., Natrinema salinisoli sp. nov., Natrinema amylolyticum sp. nov. and Haloterrigena alkaliphila sp. nov., four extremely halophilic archaea isolated from salt mine, saline soil and salt lake [J].
Bao, Chen-Xi ;
Li, Si-Ya ;
Xin, Yu-Jie ;
Hou, Jing ;
Cui, Heng-Lin .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2022, 72 (05)
[3]   Halorussus rarus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern [J].
Cui, Heng-Lin ;
Gao, Xia ;
Yang, Xin ;
Xu, Xue-Wei .
EXTREMOPHILES, 2010, 14 (06) :493-499
[4]   Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium [J].
Cui, Heng-Lin ;
Zhou, Pei-Jin ;
Oren, Aharon ;
Liu, Shuang-Jiang .
EXTREMOPHILES, 2009, 13 (01) :31-37
[5]   Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena [J].
de la Haba, Rafael R. ;
Minegishi, Hiroaki ;
Kamekura, Masahiro ;
Shimane, Yasuhiro ;
Ventosa, Antonio .
FRONTIERS IN MICROBIOLOGY, 2021, 12
[6]   AN IMPROVED TECHNIQUE FOR STAINING RED HALOPHILIC BACTERIA [J].
DUSSAULT, HP .
JOURNAL OF BACTERIOLOGY, 1955, 70 (04) :484-485
[7]   EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH [J].
FELSENSTEIN, J .
JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) :368-376
[8]   TOWARD DEFINING COURSE OF EVOLUTION - MINIMUM CHANGE FOR A SPECIFIC TREE TOPOLOGY [J].
FITCH, WM .
SYSTEMATIC ZOOLOGY, 1971, 20 (04) :406-&
[9]   DNA-DNA hybridization values and their relationship to whole-genome sequence similarities [J].
Goris, Johan ;
Konstantinidis, Konstantinos T. ;
Klappenbach, Joel A. ;
Coenye, Tom ;
Vandamme, Peter ;
Tiedje, James M. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :81-91
[10]   Phylogenomic analyses and molecular signatures for the class Halobacteria and its two major clades: a proposal for division of the class Halobacteria into an emended order Halobacteriales and two new orders, Haloferacales ord. nov and Natrialbales ord. nov., containing the novel families Haloferacaceae fam. nov and Natrialbaceae fam. nov. [J].
Gupta, Radhey S. ;
Naushad, Sohail ;
Baker, Sheridan .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :1050-1069