GMP Synthetase: Allostery, Structure, and Function

被引:3
作者
Ballut, Lionel [1 ]
Violot, Sebastien [1 ]
Kumar, Sanjeev [2 ]
Aghajari, Nushin [1 ]
Balaram, Hemalatha [3 ]
机构
[1] Univ Lyon1, Mol Microbiol & Struct Biochem, CNRS, UMR5086, 7 Passage Vercors, F-69367 Lyon 7, France
[2] Ashoka Univ, Trivedi Sch Biosci, Sonipat 131029, Haryana, India
[3] Jawaharlal Nehru Ctr Adv Sci Res, Mol Biol & Genet Unit, Bangalore 560064, India
关键词
GMP synthetase; glutamine amidotransferase; ATP pyrophosphatase; glutaminase; crystal structure; allostery; ammonia channeling; drug target; succinimide; GUANOSINE-MONOPHOSPHATE SYNTHASE; BIOCHEMICAL-CHARACTERIZATION; PLASMODIUM-FALCIPARUM; CRYSTAL-STRUCTURE; GLUTAMINE AMIDOTRANSFERASE; CONFORMATIONAL-CHANGES; ASPARAGINE SYNTHETASE; KINETIC MECHANISM; DOMAIN; SITE;
D O I
10.3390/biom13091379
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Glutamine amidotransferases (GATs) catalyze the hydrolysis of glutamine and transfer the generated ammonia to diverse metabolites. The two catalytic activities, glutaminolysis and the subsequent amination of the acceptor substrate, happen in two distinct catalytic pockets connected by a channel that facilitates the movement of ammonia. The de novo pathway for the synthesis of guanosine monophosphate (GMP) from xanthosine monophosphate (XMP) is enabled by the GAT GMP synthetase (GMPS). In most available crystal structures of GATs, the ammonia channel is evident in their native state or upon ligand binding, providing molecular details of the conduit. In addition, conformational changes that enable the coordination of the two catalytic chemistries are also informed by the available structures. In contrast, despite the first structure of a GMPS being published in 1996, the understanding of catalysis in the acceptor domain and inter-domain crosstalk became possible only after the structure of a glutamine-bound mutant of Plasmodium falciparum GMPS was determined. In this review, we present the current status of our understanding of the molecular basis of catalysis in GMPS, becoming the first comprehensive assessment of the biochemical function of this intriguing enzyme.
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页数:23
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共 65 条
  • [1] The effects of removing the GAT domain from E-coli GMP synthetase
    Abbott, Jessica L.
    Newell, Jordan M.
    Lightcap, Christine M.
    Olanich, Mary E.
    Loughlin, Danielle T.
    Weller, Melanie A.
    Lam, Gary
    Pollack, Sidney
    Patton, Walter A.
    [J]. PROTEIN JOURNAL, 2006, 25 (7-8) : 483 - 491
  • [2] Solution Nuclear Magnetic Resonance Structure of the GATase Subunit and Structural Basis of the Interaction between GATase and ATPPase Subunits in a two-subunit-type GMPS from Methanocaldococcus jannaschii
    Ali, Rustam
    Kumar, Sanjeev
    Balaram, Hemalatha
    Sarma, Siddhartha P.
    [J]. BIOCHEMISTRY, 2013, 52 (25) : 4308 - 4323
  • [3] Tertiary and Quaternary Structure Organization in GMP Synthetases: Implications for Catalysis
    Ballut, Lionel
    Violot, Sebastien
    Galisson, Frederic
    Goncalves, Isabelle R.
    Martin, Juliette
    Shivakumaraswamy, Santosh
    Carrique, Loic
    Balaram, Hemalatha
    Aghajari, Nushin
    [J]. BIOMOLECULES, 2022, 12 (07)
  • [4] Active site coupling in Plasmodium falciparum GMP synthetase is triggered by domain rotation
    Ballut, Lionel
    Violot, Sebastien
    Shivakumaraswamy, Santosh
    Thota, Lakshmi Prasoona
    Sathya, Manu
    Kunala, Jyothirmai
    Dijkstra, Bauke W.
    Terreux, Raphael
    Haser, Richard
    Balaram, Hemalatha
    Aghajari, Nushin
    [J]. NATURE COMMUNICATIONS, 2015, 6
  • [5] Substrate-induced conformational changes in Plasmodium falciparum guanosine monophosphate synthetase
    Bhat, Javaid Y.
    Venkatachala, Roopa
    Balaram, Hemalatha
    [J]. FEBS JOURNAL, 2011, 278 (19) : 3756 - 3768
  • [6] Kinetic and biochemical characterization of Plasmodium falciparum GMP synthetase
    Bhat, Javaid Yousuf
    Shastri, Brahmanaspati Ganapathi
    Balaram, Hemalatha
    [J]. BIOCHEMICAL JOURNAL, 2008, 409 (01) : 263 - 273
  • [7] Ammonia Channeling in Plasmodium falciparum GMP Synthetase: Investigation by NMR Spectroscopy and Biochemical Assays
    Bhat, Javaid Yousuf
    Venkatachala, Roopa
    Singh, Kavita
    Gupta, Kallol
    Sarma, Siddhartha P.
    Balaram, Hemalatha
    [J]. BIOCHEMISTRY, 2011, 50 (16) : 3346 - 3356
  • [8] Pharmacological targeting of guanosine monophosphate synthase suppresses melanoma cell invasion and tumorigenicity
    Bianchi-Smiraglia, A.
    Wawrzyniak, J. A.
    Bagati, A.
    Marvin, E. K.
    Ackroyd, J.
    Moparthy, S.
    Bshara, W.
    Fink, E. E.
    Foley, C. E.
    Morozevich, G. E.
    Berman, A. E.
    Shewach, D. S.
    Nikiforov, M. A.
    [J]. CELL DEATH AND DIFFERENTIATION, 2015, 22 (11) : 1858 - 1864
  • [9] Functional Profiling of a Plasmodium Genome Reveals an Abundance of Essential Genes
    Bushell, Ellen
    Gomes, Ana Rita
    Sanderson, Theo
    Anar, Burcu
    Girling, Gareth
    Herd, Colin
    Metcalf, Tom
    Modrzynska, Katarzyna
    Schwach, Frank
    Martin, Rowena E.
    Mather, Michael W.
    McFadden, Geoffrey I.
    Parts, Leopold
    Rutledge, Gavin G.
    Vaidya, Akhil B.
    Wengelnik, Kai
    Rayner, Julian C.
    Billker, Oliver
    [J]. CELL, 2017, 170 (02) : 260 - +
  • [10] Mechanism for acivicin inactivation of triad glutamine amidotransferases
    Chittur, SV
    Klem, TJ
    Shafer, CM
    Davisson, VJ
    [J]. BIOCHEMISTRY, 2001, 40 (04) : 876 - 887