Genome-Wide Analysis of the MADS-box Gene Family and Expression Analysis during Anther Development in Salvia miltiorrhiza

被引:4
|
作者
Chai, Songyue [1 ,2 ]
Li, Kexin [1 ,2 ]
Deng, Xuexue [1 ,2 ]
Wang, Long [1 ,2 ]
Jiang, Yuanyuan [1 ,2 ]
Liao, Jinqiu [1 ,3 ]
Yang, Ruiwu [1 ,3 ]
Zhang, Li [1 ,2 ]
机构
[1] Sichuan Agr Univ, Featured Med Plants Sharing & Serv Platform Sichua, Yaan 625014, Peoples R China
[2] Sichuan Agr Univ, Coll Sci, Yaan 625014, Peoples R China
[3] Sichuan Agr Univ, Coll Life Sci, Yaan 625014, Peoples R China
关键词
Salvia miltiorrhiza; MADS-box; genome-wide; expression patterns; anther development; TRANSCRIPTION FACTORS; PROTEIN INTERACTIONS; FLOWER DEVELOPMENT; DOMAIN PROTEINS; FLORAL ORGAN; EVOLUTION; DUPLICATION; ARABIDOPSIS; DIVERGENCE; OSMADS3;
D O I
10.3390/ijms241310937
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
MADS-box genes constitute a large family of transcription factors that play important roles in plant growth and development. However, our understanding of MADS-box genes involved in anther development and male sterility in Salvia miltiorrhiza is still limited. In this study, 63 MADS-box genes were identified from the genome of the male sterility ecotype Sichuan S. miltiorrhiza (S. miltiorrhiza_SC) unevenly distributed among eight chromosomes. Phylogenetic analysis classified them into two types and 17 subfamilies. They contained 1 to 12 exons and 10 conserved motifs. Evolution analysis showed that segmental duplication was the main force for the expansion of the SmMADS gene family, and duplication gene pairs were under purifying selection. Cis-acting elements analysis demonstrated that the promoter of SmMADS genes contain numerous elements associated with plant growth and development, plant hormones, and stress response. RNA-seq showed that the expression levels of B-class and C-class SmMADS genes were highly expressed during anther development, with SmMADS11 likely playing an important role in regulating anther development and male fertility in S. miltiorrhiza_SC. Overall, this study provides a comprehensive analysis of the MADS-box gene family in S. miltiorrhiza, shedding light on their potential role in anther development and male sterility.
引用
收藏
页数:16
相关论文
共 50 条
  • [21] Genome-wide analysis of the MADS-box gene family in Brassica rapa (Chinese cabbage)
    Duan, Weike
    Song, Xiaoming
    Liu, Tongkun
    Huang, Zhinan
    Ren, Jun
    Hou, Xilin
    Li, Ying
    MOLECULAR GENETICS AND GENOMICS, 2015, 290 (01) : 239 - 255
  • [22] Genome-Wide Analysis of the MADS-Box Gene Family in Maize: Gene Structure, Evolution, and Relationships
    Zhao, Da
    Chen, Zheng
    Xu, Lei
    Zhang, Lijun
    Zou, Quan
    GENES, 2021, 12 (12)
  • [23] Genome-Wide Analysis of the MADS-Box Gene Family in Hibiscus syriacus and Their Role in Floral Organ Development
    Wang, Jie
    Ye, Heng
    Li, Xiaolong
    Lv, Xue
    Lou, Jiaqi
    Chen, Yulu
    Yu, Shuhan
    Zhang, Lu
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (01)
  • [24] The Pentatricopeptide Repeat Gene Family in Salvia miltiorrhiza: Genome-Wide Characterization and Expression Analysis
    Li, Heqin
    Li, Caili
    Deng, Yuxing
    Jiang, Xuwen
    Lu, Shanfa
    MOLECULES, 2018, 23 (06):
  • [25] Genome-wide characterization of the MADS-box gene family in Paeonia ostii and expression analysis of genes related to floral organ development
    Yang, Xueting
    Guo, Qi
    Liu, Shaodan
    Wang, Duoduo
    Zuo, Dingding
    Niu, Tongfei
    Wei, Dongfeng
    Guo, Lili
    Hou, Xiaogai
    BMC GENOMICS, 2025, 26 (01):
  • [26] Genome-wide identification and expression profile of the MADS-box gene family in Erigeron breviscapus
    Tang, Wen
    Tu, Yayi
    Cheng, Xiaojie
    Zhang, Lili
    Meng, Hengling
    Zhao, Xin
    Zhang, Wei
    He, Bin
    PLOS ONE, 2019, 14 (12):
  • [27] Evolution and divergence of the MADS-box gene family based on genome-wide expression analyses
    Kofuji, R
    Sumikawa, N
    Yamasaki, M
    Kondo, K
    Ueda, K
    Ito, M
    Hasebe, M
    MOLECULAR BIOLOGY AND EVOLUTION, 2003, 20 (12) : 1963 - 1977
  • [28] Genome-Wide Identification and Analysis of the MADS-Box Gene Family in American Beautyberry (Callicarpa americana)
    Alhindi, Tareq
    Al-Abdallat, Ayed M.
    PLANTS-BASEL, 2021, 10 (09):
  • [29] Genome-wide identification and expression analysis of the MADS-box transcription factor family in Camellia sinensis
    Zai-Bao Zhang
    Yuan-Jin Jin
    Hou-Hong Wan
    Lin Cheng
    Zhi-Guo Feng
    Journal of Applied Genetics, 2021, 62 : 249 - 264
  • [30] MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress
    Rita Arora
    Pinky Agarwal
    Swatismita Ray
    Ashok Kumar Singh
    Vijay Pal Singh
    Akhilesh K Tyagi
    Sanjay Kapoor
    BMC Genomics, 8