Genome-Wide Analysis of the MADS-box Gene Family and Expression Analysis during Anther Development in Salvia miltiorrhiza

被引:4
|
作者
Chai, Songyue [1 ,2 ]
Li, Kexin [1 ,2 ]
Deng, Xuexue [1 ,2 ]
Wang, Long [1 ,2 ]
Jiang, Yuanyuan [1 ,2 ]
Liao, Jinqiu [1 ,3 ]
Yang, Ruiwu [1 ,3 ]
Zhang, Li [1 ,2 ]
机构
[1] Sichuan Agr Univ, Featured Med Plants Sharing & Serv Platform Sichua, Yaan 625014, Peoples R China
[2] Sichuan Agr Univ, Coll Sci, Yaan 625014, Peoples R China
[3] Sichuan Agr Univ, Coll Life Sci, Yaan 625014, Peoples R China
关键词
Salvia miltiorrhiza; MADS-box; genome-wide; expression patterns; anther development; TRANSCRIPTION FACTORS; PROTEIN INTERACTIONS; FLOWER DEVELOPMENT; DOMAIN PROTEINS; FLORAL ORGAN; EVOLUTION; DUPLICATION; ARABIDOPSIS; DIVERGENCE; OSMADS3;
D O I
10.3390/ijms241310937
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
MADS-box genes constitute a large family of transcription factors that play important roles in plant growth and development. However, our understanding of MADS-box genes involved in anther development and male sterility in Salvia miltiorrhiza is still limited. In this study, 63 MADS-box genes were identified from the genome of the male sterility ecotype Sichuan S. miltiorrhiza (S. miltiorrhiza_SC) unevenly distributed among eight chromosomes. Phylogenetic analysis classified them into two types and 17 subfamilies. They contained 1 to 12 exons and 10 conserved motifs. Evolution analysis showed that segmental duplication was the main force for the expansion of the SmMADS gene family, and duplication gene pairs were under purifying selection. Cis-acting elements analysis demonstrated that the promoter of SmMADS genes contain numerous elements associated with plant growth and development, plant hormones, and stress response. RNA-seq showed that the expression levels of B-class and C-class SmMADS genes were highly expressed during anther development, with SmMADS11 likely playing an important role in regulating anther development and male fertility in S. miltiorrhiza_SC. Overall, this study provides a comprehensive analysis of the MADS-box gene family in S. miltiorrhiza, shedding light on their potential role in anther development and male sterility.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] Genome-wide analysis of the MADS-Box gene family in Chrysanthemum
    Won, So Youn
    Jung, Jae-A
    Kim, Jung Sun
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2021, 90
  • [2] Genome-wide analysis of the MADS-box gene family in cucumber
    Hu, Lifang
    Liu, Shiqiang
    GENOME, 2012, 55 (03) : 245 - 256
  • [3] Genome-wide Analysis of the MADS-Box Gene Family in Watermelon
    Wang, Ping
    Wang, Songbo
    Chen, Yong
    Xu, Xiaomin
    Guang, Xuanmin
    Zhang, Youhua
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 80 : 341 - 350
  • [4] Genome-wide survey and expression analysis of the MADS-box gene family in soybean
    Shu, Yongjun
    Yu, Diansi
    Wang, Dan
    Guo, Donglin
    Guo, Changhong
    MOLECULAR BIOLOGY REPORTS, 2013, 40 (06) : 3901 - 3911
  • [5] Genome-wide survey and expression analysis of the MADS-box gene family in soybean
    Yongjun Shu
    Diansi Yu
    Dan Wang
    Donglin Guo
    Changhong Guo
    Molecular Biology Reports, 2013, 40 : 3901 - 3911
  • [6] Genome-Wide Analysis of the MADS-Box Gene Family in Brachypodium distachyon
    Wei, Bo
    Zhang, Rong-Zhi
    Guo, Juan-Juan
    Liu, Dan-Mei
    Li, Ai-Li
    Fan, Ren-Chun
    Mao, Long
    Zhang, Xiang-Qi
    PLOS ONE, 2014, 9 (01):
  • [7] Genome-wide identification and analysis of the MADS-box gene family in apple
    Tian, Yi
    Dong, Qinglong
    Ji, Zhirui
    Chi, Fumei
    Cong, Peihua
    Zhou, Zongshan
    GENE, 2015, 555 (02) : 277 - 290
  • [8] Genome-wide analysis of the MADS-box gene family in Populus trichocarpa
    Leseberg, Charles H.
    Li, Aili
    Kang, Hui
    Duvall, Melvin
    Mao, Long
    GENE, 2006, 378 : 84 - 94
  • [9] Genome-wide identification and analysis of the MADS-box gene family in sesame
    Wei, Xin
    Wang, Linhai
    Yu, Jingyin
    Zhang, Yanxin
    Li, Donghua
    Zhang, Xiurong
    GENE, 2015, 569 (01) : 66 - 76
  • [10] Genome-Wide Analysis and the Expression Pattern of the MADS-Box Gene Family in Bletilla striata
    Mi, Ze-Yuan
    Zhao, Qian
    Lu, Chan
    Zhang, Qian
    Li, Lin
    Liu, Shuai
    Wang, Shi-Qiang
    Wang, Zhe-Zhi
    Niu, Jun-Feng
    PLANTS-BASEL, 2021, 10 (10):