Influence of membrane pore-size on the recovery of endogenous viruses from wastewater using an adsorption-extraction method

被引:9
作者
Ahmed, Warish [1 ,6 ]
Smith, Wendy J. M. [1 ]
Sirikanchana, Kwanrawee [2 ]
Kitajima, Masaaki [3 ]
Bivins, Aaron [4 ]
Simpson, Stuart L. [5 ]
机构
[1] CSIRO Environm, Ecosci Precinct, 41 Boggo Rd, Dutton Pk, Qld 4102, Australia
[2] Chulabhorn Res Inst, Res Lab Biotechnol, 54 Kampangpetch 6 Rd, Bangkok 10210, Thailand
[3] Hokkaido Univ, Fac Engn, Div Environm Engn, North 13 West 8,Kita Ku, Sapporo, Hokkaido 0608628, Japan
[4] Louisiana State Univ, Dept Civil & Environm Engn, 3255 Patrick F Taylor Hall, Baton Rouge, LA 70803 USA
[5] CSIRO Environm, Lucas Heights, NSW 2234, Australia
[6] Ecosci Precinct, 41 Boggo Rd, Dutton Pk, Qld 4102, Australia
关键词
Wastewater -based epidemiology; Virus recovery; Adsorption -extraction method; Genetic material detection; Membrane pore size; Endogenous viruses; ENTEROVIRUS; SARS-COV-2; QUANTIFY;
D O I
10.1016/j.jviromet.2023.114732
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The ongoing COVID-19 pandemic has emphasized the significance of wastewater surveillance in monitoring and tracking the spread of infectious diseases, including SARS-CoV-2. The wastewater surveillance approach detects genetic fragments from viruses in wastewater, which could provide an early warning of outbreaks in commu-nities. In this study, we determined the concentrations of four types of endogenous viruses, including non -enveloped DNA (crAssphage and human adenovirus 40/41), non-enveloped RNA (enterovirus), and enveloped RNA (SARS-CoV-2) viruses, from wastewater samples using the adsorption-extraction (AE) method with elec-tronegative HA membranes of different pore sizes (0.22, 0.45, and 0.80 & mu;m). Our findings showed that the membrane with a pore size of 0.80 & mu;m performed comparably to the membrane with a pore size of 0.45 & mu;m for virus detection/quantitation (repeated measurement one-way ANOVA; p > 0.05). We also determined the re-covery efficiencies of indigenous crAssphage and pepper mild mottle virus, which showed recovery efficiencies ranging from 50% to 94% and from 20% to 62%, respectively. Our results suggest that the use of larger pore size membranes may be beneficial for processing larger sample volumes, particularly for environmental waters containing low concentrations of viruses. This study offers valuable insights into the application of the AE method for virus recovery from wastewater, which is essential for monitoring and tracking infectious diseases in communities.
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页数:7
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共 57 条
  • [1] Comparison of Concentration Methods for Quantitative Detection of Sewage-Associated Viral Markers in Environmental Waters
    Ahmed, W.
    Harwood, V. J.
    Gyawali, P.
    Sidhu, J. P. S.
    Toze, S.
    [J]. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2015, 81 (06) : 2042 - 2049
  • [2] Ahmed W., 2023, SCI TOTAL ENV POTENT
  • [3] Ahmed W., 2023, SCI TOTAL ENVIRON
  • [4] Comparative analysis of Adsorption-Extraction (AE) and Nanotrap® Magnetic Virus Particles (NMVP) workflows for the recovery of endogenous enveloped and non-enveloped viruses in wastewater
    Ahmed, Warish
    Bivins, Aaron
    Korajkic, Asja
    Metcalfe, Suzanne
    Smith, Wendy J. M.
    Simpson, Stuart L.
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2023, 859
  • [5] Comparison of RT-qPCR and RT-dPCR Platforms for the Trace Detection of SARS-CoV-2 RNA in Wastewater
    Ahmed, Warish
    Smith, Wendy J. M.
    Metcalfe, Suzanne
    Jackson, Greg
    Choi, Phil M.
    Morrison, Mary
    Field, Daniel
    Gyawali, Pradip
    Bivins, Aaron
    Bibby, Kyle
    Simpson, Stuart L.
    [J]. ACS ES&T WATER, 2022, : 1871 - 1880
  • [6] Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance
    Ahmed, Warish
    Simpson, Stuart L.
    Bertsch, Paul M.
    Bibby, Kyle
    Bivins, Aaron
    Blackall, Linda L.
    Bofill-Mas, Silvia
    Bosch, Albert
    Brandao, Joao
    Choi, Phil M.
    Ciesielski, Mark
    Donner, Erica
    D'Souza, Nishita
    Farnleitner, Andreas H.
    Gerrity, Daniel
    Gonzalez, Raul
    Griffith, John F.
    Gyawali, Pradip
    Haas, Charles N.
    Hamilton, Kerry A.
    Hapuarachchi, Hapuarachchige Chandithal
    Harwood, Valerie J.
    Haque, Rehnuma
    Jackson, Greg
    Khan, Stuart J.
    Khan, Wesaal
    Kitajima, Masaaki
    Korajkic, Asja
    La Rosa, Giuseppina
    Layton, Blythe A.
    Lipp, Erin
    McLellan, Sandra L.
    McMinn, Brian
    Medema, Gertjan
    Metcalfe, Suzanne
    Meijer, Wim G.
    Mueller, Jochen F.
    Murphy, Heather
    Naughton, Coleen C.
    Noble, Rachel T.
    Payyappat, Sudhi
    Petterson, Susan
    Pitkanen, Tarja
    Rajal, Veronica B.
    Reyneke, Brandon
    Roman, Fernando A., Jr.
    Rose, Joan B.
    Rusinol, Marta
    Sadowsky, Michael J.
    Sala-Comorera, Laura
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2022, 805
  • [7] Comparative analysis of rapid concentration methods for the recovery of SARS-CoV-2 and quantification of human enteric viruses and a sewage-associated marker gene in untreated wastewater
    Ahmed, Warish
    Bivins, Aaron
    Simpson, Stuart L.
    Smith, Wendy J. M.
    Metcalfe, Suzanne
    McMinn, Brian
    Symonds, Erin M.
    Korajkic, Asja
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2021, 799 (799)
  • [8] Comparison of virus concentration methods for the RT-qPCR-based recovery of murine hepatitis virus, a surrogate for SARS-CoV-2 from untreated wastewater
    Ahmed, Warish
    Bertsch, Paul M.
    Bivins, Aaron
    Bibby, Kyle
    Farkas, Kata
    Gathercole, Amy
    Haramoto, Eiji
    Gyawali, Pradip
    Korajkic, Asja
    McMinn, Brian R.
    Mueller, Jochen F.
    Simpson, Stuart L.
    Smith, Wendy J. M.
    Symonds, Erin M.
    Thomas, Kevin, V
    Verhagen, Rory
    Kitajima, Masaaki
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2020, 739
  • [9] First con firmed detection of SARS-CoV-2 in untreated wastewater in Australia: A proof of concept for the wastewater surveillance of COVID-19 in the community
    Ahmed, Warish
    Angel, Nicola
    Edson, Janette
    Bibby, Kyle
    Bivins, Aaron
    O'Brien, Jake W.
    Choi, Phil M.
    Kitajima, Masaaki
    Simpson, Stuart L.
    Li, Jiaying
    Tscharke, Ben
    Verhagen, Rory
    Smith, Wendy J. M.
    Zaugg, Julian
    Dierens, Leanne
    Hugenholtz, Philip
    Thomas, Kevin, V
    Mueller, Jochen F.
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2020, 728
  • [10] Impact of the COVID-19 pandemic on the prevalence of influenza A and respiratory syncytial viruses elucidated by wastewater-based epidemiology
    Ando, Hiroki
    Ahmed, Warish
    Iwamoto, Ryo
    Ando, Yoshinori
    Okabe, Satoshi
    Kitajima, Masaaki
    [J]. SCIENCE OF THE TOTAL ENVIRONMENT, 2023, 880