Elucidating the inhibitory mechanism of yeast α-glucosidase by phytocompounds from Scoparia dulcis through in vitro and in silico approach

被引:2
作者
Murugan, Gopinath [1 ]
Rajkumar, Divya Sangeetha [1 ]
Kaliyaperumal, Malarvizhi [2 ]
Ramdoss, Ramya [3 ,4 ]
Natarajan, Sasirekha [1 ]
Padmanaban, Rajashree [1 ]
机构
[1] Univ Madras, Ctr Adv Study Crystallog & Biophys, Chennai 600025, Tamil Nadu, India
[2] Univ Madras, Ctr Adv Study Bot, Chennai, Tamil Nadu, India
[3] SRM Univ, Dept Oral Pathol, Chennai, Tamil Nadu, India
[4] Saveetha Univ, Dept Oral Pathol, Chennai, Tamil Nadu, India
关键词
Scoparia dulcis; alpha-glucosidase; scopadulcic acid B; betulunic acid; enzyme kinetics; molecular docking; PARTICLE MESH EWALD; PROTEIN; MODELS; TOOL;
D O I
10.1080/07391102.2022.2035820
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Antidiabetic activity of herb Scoparia dulcis Linn (SD) used in traditional medicine is well established, yet, the molecular mechanism is not understood. In this study, in vitro alpha-glucosidase inhibitory effects of SD aqueous extract and its kinetics were investigated and in silico analysis was carried out. SD showed potent inhibition of alpha-glucosidase with low IC(50)value (30 mu g/mL). Enzyme kinetics analysis revealed the inhibition to be a mixed type of inhibition. From literature screening, we found that six compounds of SD to exhibit potent anti-diabetic activity, namely apigenin, betulinic acid, hispidulin, luteolin, scopadulcic-acid-B and scutellarein. These compounds were subjected to molecular docking. Docking studies revealed scopadulcic acid B and betulunic acid to show optimum binding constant and low free energy. Molecular dynamics simulation was carried out to further understand the interaction and stability between glucosidase and ligands of SD. Taken together, the study reveals that the potency of SD is due to synergistic effect of active phytochemicals in it and suggest that their properties can be utilized for anti-diabetic treatment strategies.
引用
收藏
页码:2574 / 2586
页数:13
相关论文
共 44 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[3]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[4]   Function and structure of GH13_31 α-glucosidase with high α-(1→4)-glucosidic linkage specificity and transglucosylation activity [J].
Auiewiriyanukul, Waraporn ;
Saburi, Wataru ;
Kato, Koji ;
Yao, Min ;
Mori, Haruhide .
FEBS LETTERS, 2018, 592 (13) :2268-2281
[5]   VERIFICATION OF PROTEIN STRUCTURES - PATTERNS OF NONBONDED ATOMIC INTERACTIONS [J].
COLOVOS, C ;
YEATES, TO .
PROTEIN SCIENCE, 1993, 2 (09) :1511-1519
[6]   SwissADME: a free web tool to evaluate pharmacokinetics, drug-likeness and medicinal chemistry friendliness of small molecules [J].
Daina, Antoine ;
Michielin, Olivier ;
Zoete, Vincent .
SCIENTIFIC REPORTS, 2017, 7
[7]   PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[8]  
Delano W.L., 2002, CCP4 Newsl. Protein Crystallogr., V40
[9]   Evaluation of the Use of Different Solvents for Phytochemical Constituents, Antioxidants, and In Vitro Anti-Inflammatory Activities of Severinia buxifolia [J].
Dieu-Hien Truong ;
Dinh Hieu Nguyen ;
Nhat Thuy Anh Ta ;
Anh Vo Bui ;
Tuong Ha Do ;
Hoang Chinh Nguyen .
JOURNAL OF FOOD QUALITY, 2019, 2019
[10]   VERIFY3D: Assessment of protein models with three-dimensional profiles [J].
Eisenberg, D ;
Luthy, R ;
Bowie, JU .
MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :396-404