Synthesis of ubiquitinated proteins for biochemical and functional analysis

被引:7
作者
Kriegesmann, Julia [1 ]
Brik, Ashraf [1 ]
机构
[1] Technion Israel Inst Technol, Schulich Fac Chem, Haifa, Israel
基金
欧洲研究理事会;
关键词
HISTONE H2B UBIQUITYLATION; CONVERGENT CHEMICAL-SYNTHESIS; ALPHA-SYNUCLEIN; STRUCTURAL BASIS; H4-K16; ACETYLATION; ISOPEPTIDE BOND; DRUG DISCOVERY; REVEALS; METHYLATION; DEUBIQUITINATION;
D O I
10.1039/d3sc03664b
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Ubiquitination plays a crucial role in controlling various biological processes such as translation, DNA repair and immune response. Protein degradation for example, is one of the main processes which is controlled by the ubiquitin system and has significant implications on human health. In order to investigate these processes and the roles played by different ubiquitination patterns on biological systems, homogeneously ubiquitinated proteins are needed. Notably, these conjugates that are made enzymatically in cells cannot be easily obtained in large amounts and high homogeneity by employing such strategies. Therefore, chemical and semisynthetic approaches have emerged to prepare different ubiquitinated proteins. In this review, we will present the key synthetic strategies and their applications for the preparation of various ubiquitinated proteins. Furthermore, the use of these precious conjugates in different biochemical and functional studies will be highlighted. In this review, we present the key synthetic strategies for the preparation of various ubiquitinated proteins and the application of these conjugates in biochemical and functional studies.
引用
收藏
页码:10025 / 10040
页数:16
相关论文
共 128 条
[1]  
Ai H., 2023, Chem, V9, P1221
[2]   Chemical Synthesis of Post-Translationally Modified H2AX Reveals Redundancy in Interplay between Histone Phosphorylation, Ubiquitination, and Methylation on the Binding of 53BP1 with Nucleosomes [J].
Ai, Huasong ;
Chu, Guo-Chao ;
Gong, Qingyue ;
Tong, Ze-Bin ;
Deng, Zhiheng ;
Liu, Xin ;
Yang, Fan ;
Xu, Ziyu ;
Li, Jia-Bin ;
Tian, Changlin ;
Liu, Lei .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2022, 144 (40) :18329-18337
[3]   H2B Lys34 Ubiquitination Induces Nucleosome Distortion to Stimulate Dot1L Activity [J].
Ai, Huasong ;
Sun, Maoshen ;
Liu, Aijun ;
Sun, Zixian ;
Liu, Tingting ;
Cao, Lin ;
Liang, Lujun ;
Qu, Qian ;
Li, Zichen ;
Deng, Zhiheng ;
Tong, Zebin ;
Chu, Guochao ;
Tian, Xiaolin ;
Deng, Haiteng ;
Zhao, Suwen ;
Li, Jia-Bin ;
Lou, Zhiyong ;
Liu, Lei .
NATURE CHEMICAL BIOLOGY, 2022, 18 (09) :972-+
[4]   Examination of the Deubiquitylation Site Selectivity of USP51 by Using Chemically Synthesized Ubiquitylated Histones [J].
Ai, Huasong ;
Guo, Yu ;
Sun, Demeng ;
Liu, Sanling ;
Qi, Yunkun ;
Guo, Jing ;
Qu, Qian ;
Gong, Qingyue ;
Zhao, Suwen ;
Li, Jiabin ;
Liu, Lei .
CHEMBIOCHEM, 2019, 20 (02) :221-229
[5]  
Ausländer D, 2018, NAT METHODS, V15, P57, DOI [10.1038/nmeth.4505, 10.1038/NMETH.4505]
[6]   Tyrosine phosphorylation of histone H2A by CK2 regulates transcriptional elongation [J].
Basnet, Harihar ;
Su, Xue B. ;
Tan, Yuliang ;
Meisenhelders, Jill ;
Merkurjev, Dana ;
Ohgi, Kenneth A. ;
Hunters, Tony ;
Pillus, Lorraine ;
Rosenfeld, Michael G. .
NATURE, 2014, 516 (7530) :267-+
[7]   Design, synthesis, and characterization of 4-ester CI2, a model for backbone hydrogen bonding in protein α-helices [J].
Beligere, GS ;
Dawson, PE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (49) :12079-12082
[8]   H2A-DUBbing the mammalian epigenome: Expanding frontiers for histone H2A deubiquitinating enzymes in cell biology and physiology [J].
Belle, Jad I. ;
Nijnik, Anastasia .
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY, 2014, 50 :161-174
[9]   MLL-Rearranged Leukemia Is Dependent on Aberrant H3K79 Methylation by DOT1L [J].
Bernt, Kathrin M. ;
Zhu, Nan ;
Sinha, Amit U. ;
Vempati, Sridhar ;
Faber, Joerg ;
Krivtsov, Andrei V. ;
Feng, Zhaohui ;
Punt, Natalie ;
Daigle, Amanda ;
Bullinger, Lars ;
Pollock, Roy M. ;
Richon, Victoria M. ;
Kung, Andrew L. ;
Armstrong, Scott A. .
CANCER CELL, 2011, 20 (01) :66-78
[10]   Semisynthetic UbH2A reveals different activities of deubiquitinases and inhibitory effects of H2A K119 ubiquitination on H3K36 methylation in mononucleosomes [J].
Bi, Xiaobao ;
Yang, Renliang ;
Feng, Xiaoyu ;
Rhodes, Daniela ;
Liu, Chuan-Fa .
ORGANIC & BIOMOLECULAR CHEMISTRY, 2016, 14 (03) :835-839