Mechanistic Insight into the Amyloid Fibrillation Inhibition of Hen Egg White Lysozyme by Three Different Bile Acids

被引:16
作者
Jamuna, Nidhi Anilkumar [1 ]
Kamalakshan, Adithya [1 ]
Dandekar, Bhupendra Ramesh [2 ]
Devassy, Anu Maria Chittilappilly [1 ]
Mondal, Jagannath [2 ]
Mandal, Sarthak [1 ]
机构
[1] Natl Inst Technol, Dept Chem, Tiruchirappalli 620015, Tamil Nadu, India
[2] Tata Inst Fundamental Res, Hyderabad 500046, India
关键词
THIOFLAVIN T-BINDING; PROTEIN AGGREGATION; MOLECULAR-DYNAMICS; SERUM-ALBUMIN; BETA; SPECTROSCOPY; OLIGOMERS; PEPTIDE; DISEASE; FIBRILLOGENESIS;
D O I
10.1021/acs.jpcb.3c00274
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Amyloid aggregation of protein is linked to many neurodegenerative diseases. Identification of small molecules capable of targeting amyloidogenic proteins has gained significant importance. Introduction of hydrophobic and hydrogen bonding interactions through site-specific binding of small molecular ligand to protein can effectively modulate the protein aggregation pathway. Here, we investigate the possible roles of three different bile acids, cholic acid (CA), taurocholic acid (TCA), and lithocholic acid (LCA) with varying hydrophobic and hydrogen bonding properties in inhibiting protein fibrillation. Bile acids are an important class of steroid compounds that are synthesized in the liver from cholesterol. Increasing evidence suggests that altered taurine transport, cholesterol metabolism, and bile acid synthesis have strong implications in Alzheimer's disease. We find that the hydrophilic bile acids, CA and TCA (taurine conjugated form of CA), are substantially more efficient inhibitors of lysozyme fibrillation than the most hydrophobic secondary bile acid LCA. Although LCA binds more strongly with the protein and masks the Trp residues more prominently through hydrophobic interactions, the lesser extent of hydrogen bonding interactions at the active site has made LCA a relatively weaker inhibitor of HEWL aggregation than CA and TCA. The introduction of a greater number of hydrogen bonding channels by CA and TCA with several key amino acid residues which are prone to form oligomers and fibrils has weakened the protein's internal hydrogen bonding capabilities for undergoing amyloid aggregation.
引用
收藏
页码:2198 / 2213
页数:16
相关论文
共 88 条
[1]   Gromacs: High performance molecular simulations through multi-level parallelism from laptops to supercomputers [J].
Abraham, Mark James ;
Murtola, Teemu ;
Schulz, Roland ;
Páll, Szilárd ;
Smith, Jeremy C. ;
Hess, Berk ;
Lindah, Erik .
SoftwareX, 2015, 1-2 :19-25
[2]   Bile Acids in Neurodegenerative Disorders [J].
Ackerman, Hayley D. ;
Gerhard, Glenn S. .
FRONTIERS IN AGING NEUROSCIENCE, 2016, 8
[3]   Spectroscopic and Molecular Docking Investigation on the Noncovalent Interaction of Lysozyme with Saffron Constituent "Safranal" [J].
Ali, Mohd Sajid ;
Al-Lohedan, Hamad A. .
ACS OMEGA, 2020, 5 (16) :9131-9141
[4]   Metabolic Network Analysis Reveals Altered Bile Acid Synthesis and Metabolism in Alzheimer's Disease [J].
Baloni, Priyanka ;
Funk, Cory C. ;
Yan, Jingwen ;
Yurkovich, James T. ;
Kueider-Paisley, Alexandra ;
Nho, Kwangsik ;
Heinken, Almut ;
Jia, Wei ;
Mahmoudiandehkordi, Siamak ;
Louie, Gregory ;
Saykin, Andrew J. ;
Arnold, Matthias ;
Kastenmueller, Gabi ;
Griffiths, William J. ;
Thiele, Ines ;
Kaddurah-Daouk, Rima ;
Price, Nathan D. .
CELL REPORTS MEDICINE, 2020, 1 (08)
[5]   C-Terminal Fragment, Aβ32-37, Analogues Protect Against Aβ Aggregation-Induced Toxicity [J].
Bansal, Sunil ;
Maurya, Indresh Kumar ;
Yadav, Nitin ;
Thota, Chaitanya Kumar ;
Kumar, Vinod ;
Tikoo, Kulbhushan ;
Chauhan, Virander Singh ;
Jain, Rahul .
ACS CHEMICAL NEUROSCIENCE, 2016, 7 (05) :615-623
[6]   Modulating Insulin Aggregation with Charge Variable Cholic Acid-Derived Polymers [J].
Bera, Avisek ;
Sahoo, Subhasish ;
Goswami, Kalyan ;
Das, Subir Kumar ;
Ghosh, Pooja ;
De, Priyadarsi .
BIOMACROMOLECULES, 2021, 22 (11) :4833-4845
[7]   Atomistic mechanism of polyphenol amyloid aggregation inhibitors: molecular dynamics study of Curcumin, Exifone, and Myricetin interaction with the segment of tau peptide oligomer [J].
Berhanu, Workalemahu M. ;
Masunov, Artem E. .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2015, 33 (07) :1399-1411
[8]   CHARMM: The Biomolecular Simulation Program [J].
Brooks, B. R. ;
Brooks, C. L., III ;
Mackerell, A. D., Jr. ;
Nilsson, L. ;
Petrella, R. J. ;
Roux, B. ;
Won, Y. ;
Archontis, G. ;
Bartels, C. ;
Boresch, S. ;
Caflisch, A. ;
Caves, L. ;
Cui, Q. ;
Dinner, A. R. ;
Feig, M. ;
Fischer, S. ;
Gao, J. ;
Hodoscek, M. ;
Im, W. ;
Kuczera, K. ;
Lazaridis, T. ;
Ma, J. ;
Ovchinnikov, V. ;
Paci, E. ;
Pastor, R. W. ;
Post, C. B. ;
Pu, J. Z. ;
Schaefer, M. ;
Tidor, B. ;
Venable, R. M. ;
Woodcock, H. L. ;
Wu, X. ;
Yang, W. ;
York, D. M. ;
Karplus, M. .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2009, 30 (10) :1545-1614
[9]   The Role of Buffers in Wild-Type HEWL Amyloid Fibril Formation Mechanism [J].
Brudar, Sandi ;
Hribar-Lee, Barbara .
BIOMOLECULES, 2019, 9 (02)
[10]   Fluorescent N-arylaminonaphthalene sulfonate probes for amyloid aggregation of α-synuclein [J].
Celej, M. Soledad ;
Jares-Erijman, Elizabeth A. ;
Jovin, Thomas M. .
BIOPHYSICAL JOURNAL, 2008, 94 (12) :4867-4879