Vertical Microbial Profiling of Arabian Sea Oxygen Minimal Zone Reveals Complex Bacterial Communities and Distinct Functional Implications

被引:7
作者
Rangamaran, Vijaya Raghavan [1 ]
Subramanian, Sai H. Sankara [1 ]
Balachandran, Karpaga Raja Sundari [1 ]
Gopal, Dharani [1 ]
机构
[1] Govt India, Minist Earth Sci MoES, Natl Inst Ocean Technol NIOT, Marine Biotechnol Div,Ocean Sci & Technol Isl Grp, Chennai 600100, Tamil Nadu, India
关键词
Arabian Sea; OMZ; 16S rRNA; Bacterial diversity; NITROGEN LOSS; GLOBAL OCEAN; DIVERSITY; BAY; WATERS; BENGAL; OXIDATION; SEDIMENTS; FIXATION; HYPOXIA;
D O I
10.1007/s00248-021-01952-z
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Arabian Sea harbours one of the largest oxygen minimal zones (OMZs) among the global oceans wherein biogeochemical cycles are regulated through dominant and complex microbial processes. The present study investigated the bacterial communities at various depths of the Arabian Sea OMZ using high-throughput sequencing of the v3-v4 hyper variable region of 16S rRNA gene. A total of 10 samples which included water samples from 8 different depths and 2 sediment samples were analyzed in this study. About 2.7 million sequences were obtained from all the samples. The sequence analysis revealed high bacterial diversity at deep waters and sediment samples and comparatively less species richness at the core OMZ depths. Number of OTUs ranged from 114 to 14441.Taxonomic assignments of the obtained OTUs showed dominant presence of Proteobacteria, Bacteriodetes, and Chloroflexi across all the samples. The identified OTUs were further affiliated to the phyla Marinimicrobia, Colwellia, Nitrospina, Tepidicaulis, Shewanella, Pseudoalteromonas, Woeseia at various depths along the water column. Correlation with abiotic factors suggested distinct variation in bacterial community composition with change in depth and dissolved oxygen (DO) levels. Predictive functional annotation based on bacterial phylotypes suggested presence of active nitrogen, sulphur, carbon, and methane metabolic cycles along the vertical transect of the studied region. Presence of nitrogen reduction bacterial group below the core OMZ depths may potentially provide insight into the expansion of OMZ region in Arabian Sea. Functional profiling further revealed presence of genes related to xenobiotic degradation in the water and sediment samples indicating a potential hotspot for bio-prospection.
引用
收藏
页码:357 / 371
页数:15
相关论文
共 59 条
  • [31] Lincy J, 2019, BIOGEOSCI DISCUSS, P1, DOI DOI 10.5194/BG-2019-330
  • [32] A comparison of bacterial communities from OMZ sediments in the Arabian Sea and the Bay of Bengal reveals major differences in nitrogen turnover and carbon recycling potential
    Lincy, Jovitha
    Manohar, Cathrine Sumathi
    [J]. MARINE BIOLOGY RESEARCH, 2020, 16 (8-9) : 656 - 673
  • [33] Facets of diazotrophy in the oxygen minimum zone waters off Peru
    Loescher, Carolin R.
    Grosskopf, Tobias
    Desai, Falguni D.
    Gill, Diana
    Schunck, Harald
    Croot, Peter L.
    Schlosser, Christian
    Neulinger, Sven C.
    Pinnow, Nicole
    Lavik, Gaute
    Kuypers, Marcel M. M.
    LaRoche, Julie
    Schmitz, Ruth A.
    [J]. ISME JOURNAL, 2014, 8 (11) : 2180 - 2192
  • [34] Biogeochemistry of the Bay of Bengal: physical, chemical and primary productivity characteristics of the central and western Bay of Bengal during summer monsoon 2001
    Madhupratap, M
    Gauns, M
    Ramaiah, N
    Kumar, SP
    Muraleedharan, PM
    de Sousa, SN
    Sardessai, S
    Muraleedharan, U
    [J]. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY, 2003, 50 (05) : 881 - 896
  • [35] Mandal S., 2019, Biogeosciences Discussions, P1, DOI DOI 10.5194/BG-2019-248
  • [36] Dynamics of the Indian-Ocean oxygen minimum zones
    McCreary, Julian P.
    Yu, Zuojun
    Hood, Raleigh R.
    Vinaychandran, P. N.
    Furue, Ryo
    Ishida, Akio
    Richards, Kelvin J.
    [J]. PROGRESS IN OCEANOGRAPHY, 2013, 112 : 15 - 37
  • [37] phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
    McMurdie, Paul J.
    Holmes, Susan
    [J]. PLOS ONE, 2013, 8 (04):
  • [38] Seasonal variation of hydrographic and nutrient fields during the US JGOFS Arabian Sea Process Study
    Morrison, JM
    Codispoti, LA
    Gaurin, S
    Jones, B
    Manghnani, V
    Zheng, Z
    [J]. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY, 1998, 45 (10-11) : 2053 - 2101
  • [39] Diversity of culturable nitrate-reducing bacteria from the Arabian Sea oxygen minimum zone
    Mulla, Amara
    Fernandes, Genevieve
    Menezes, Larissa
    Meena, Ram Murti
    Naik, Hema
    Gauns, Manguesh
    Damare, Samir
    [J]. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY, 2018, 156 : 27 - 33
  • [40] Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments
    Mussmann, Marc
    Pjevac, Petra
    Krueger, Karen
    Dyksma, Stefan
    [J]. ISME JOURNAL, 2017, 11 (05) : 1276 - 1281