Vertical Microbial Profiling of Arabian Sea Oxygen Minimal Zone Reveals Complex Bacterial Communities and Distinct Functional Implications

被引:7
作者
Rangamaran, Vijaya Raghavan [1 ]
Subramanian, Sai H. Sankara [1 ]
Balachandran, Karpaga Raja Sundari [1 ]
Gopal, Dharani [1 ]
机构
[1] Govt India, Minist Earth Sci MoES, Natl Inst Ocean Technol NIOT, Marine Biotechnol Div,Ocean Sci & Technol Isl Grp, Chennai 600100, Tamil Nadu, India
关键词
Arabian Sea; OMZ; 16S rRNA; Bacterial diversity; NITROGEN LOSS; GLOBAL OCEAN; DIVERSITY; BAY; WATERS; BENGAL; OXIDATION; SEDIMENTS; FIXATION; HYPOXIA;
D O I
10.1007/s00248-021-01952-z
中图分类号
Q14 [生态学(生物生态学)];
学科分类号
071012 ; 0713 ;
摘要
Arabian Sea harbours one of the largest oxygen minimal zones (OMZs) among the global oceans wherein biogeochemical cycles are regulated through dominant and complex microbial processes. The present study investigated the bacterial communities at various depths of the Arabian Sea OMZ using high-throughput sequencing of the v3-v4 hyper variable region of 16S rRNA gene. A total of 10 samples which included water samples from 8 different depths and 2 sediment samples were analyzed in this study. About 2.7 million sequences were obtained from all the samples. The sequence analysis revealed high bacterial diversity at deep waters and sediment samples and comparatively less species richness at the core OMZ depths. Number of OTUs ranged from 114 to 14441.Taxonomic assignments of the obtained OTUs showed dominant presence of Proteobacteria, Bacteriodetes, and Chloroflexi across all the samples. The identified OTUs were further affiliated to the phyla Marinimicrobia, Colwellia, Nitrospina, Tepidicaulis, Shewanella, Pseudoalteromonas, Woeseia at various depths along the water column. Correlation with abiotic factors suggested distinct variation in bacterial community composition with change in depth and dissolved oxygen (DO) levels. Predictive functional annotation based on bacterial phylotypes suggested presence of active nitrogen, sulphur, carbon, and methane metabolic cycles along the vertical transect of the studied region. Presence of nitrogen reduction bacterial group below the core OMZ depths may potentially provide insight into the expansion of OMZ region in Arabian Sea. Functional profiling further revealed presence of genes related to xenobiotic degradation in the water and sediment samples indicating a potential hotspot for bio-prospection.
引用
收藏
页码:357 / 371
页数:15
相关论文
共 59 条
  • [1] Oxygen modulates bacterial community composition in the coastal upwelling waters off central Chile
    Aldunate, Montserrat
    De la Iglesia, Rodrigo
    Bertagnolli, Anthony D.
    Ulloa, Osvaldo
    [J]. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY, 2018, 156 : 68 - 79
  • [2] [Anonymous], 2022, vegan: Community Ecology Package
  • [3] Seasonal and depth-wise variations in bacterial and archaeal groups in the Arabian Sea oxygen minimum zone
    Bandekar, Mandar
    Ramaiah, Nagappa
    Jain, Anand
    Meena, Ram Murti
    [J]. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY, 2018, 156 : 4 - 18
  • [4] Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean
    Beman, J. Michael
    Shih, Joy Leilei
    Popp, Brian N.
    [J]. ISME JOURNAL, 2013, 7 (11) : 2192 - 2205
  • [5] Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column
    Bertagnolli, Anthony D.
    Padilla, Cory C.
    Glass, Jennifer B.
    Thamdrup, Bo
    Stewart, Frank J.
    [J]. ENVIRONMENTAL MICROBIOLOGY, 2017, 19 (11) : 4392 - 4416
  • [6] Declining oxygen in the global ocean and coastal waters
    Breitburg, Denise
    Levin, Lisa A.
    Oschlies, Andreas
    Gregoire, Marilaure
    Chavez, Francisco P.
    Conley, Daniel J.
    Garcon, Veronique
    Gilbert, Denis
    Gutierrez, Dimitri
    Isensee, Kirsten
    Jacinto, Gil S.
    Limburg, Karin E.
    Montes, Ivonne
    Naqvi, S. W. A.
    Pitcher, Grant C.
    Rabalais, Nancy N.
    Roman, Michael R.
    Rose, Kenneth A.
    Seibel, Brad A.
    Telszewski, Maciej
    Yasuhara, Moriaki
    Zhang, Jing
    [J]. SCIENCE, 2018, 359 (6371) : 46 - +
  • [7] Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
    Bryant, Jessica A.
    Stewart, Frank J.
    Eppley, John M.
    DeLong, Edward F.
    [J]. ECOLOGY, 2012, 93 (07) : 1659 - 1673
  • [8] Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria
    Callbeck, Cameron M.
    Lavik, Gaute
    Ferdelman, Timothy G.
    Fuchs, Bernhard
    Gruber-Vodicka, Harald R.
    Hach, Philipp F.
    Littmann, Sten
    Schoffelen, Niels J.
    Kalvelage, Tim
    Thomsen, Soeren
    Schunck, Harald
    Loescher, Carolin R.
    Schmitz, Ruth A.
    Kuypers, Marcel M. M.
    [J]. NATURE COMMUNICATIONS, 2018, 9
  • [9] QIIME allows analysis of high-throughput community sequencing data
    Caporaso, J. Gregory
    Kuczynski, Justin
    Stombaugh, Jesse
    Bittinger, Kyle
    Bushman, Frederic D.
    Costello, Elizabeth K.
    Fierer, Noah
    Pena, Antonio Gonzalez
    Goodrich, Julia K.
    Gordon, Jeffrey I.
    Huttley, Gavin A.
    Kelley, Scott T.
    Knights, Dan
    Koenig, Jeremy E.
    Ley, Ruth E.
    Lozupone, Catherine A.
    McDonald, Daniel
    Muegge, Brian D.
    Pirrung, Meg
    Reeder, Jens
    Sevinsky, Joel R.
    Tumbaugh, Peter J.
    Walters, William A.
    Widmann, Jeremy
    Yatsunenko, Tanya
    Zaneveld, Jesse
    Knight, Rob
    [J]. NATURE METHODS, 2010, 7 (05) : 335 - 336
  • [10] Spreading dead zones and consequences for marine ecosystems
    Diaz, Robert J.
    Rosenberg, Rutger
    [J]. SCIENCE, 2008, 321 (5891) : 926 - 929