Mutual influence of non-covalent interactions formed by imidazole: A systematic quantum-chemical study

被引:6
作者
Shitov, Daniil A. [1 ]
Krutin, Danil V. [1 ]
Tupikina, Elena Yu. [1 ]
机构
[1] St Petersburg State Univ, Inst Chem, St Petersburg, Russia
基金
俄罗斯科学基金会;
关键词
cooperativity of hydrogen bonds; DFT; electron density; hydrogen bonds; imidazole; mutual influence of hydrogen bonds; numerous hydrogen bonds; quantum chemistry; HYDROGEN-BONDED COMPLEXES; PROTON-TRANSFER; CARBONIC-ANHYDRASE; AB-INITIO; MOLECULAR-DYNAMICS; CATALYTIC MECHANISM; HISTIDINE-RESIDUES; ELECTRON-TRANSFER; ACTIVE-SITE; DENSITY;
D O I
10.1002/jcc.27309
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Imidazole is a five-membered heterocycle that is part of a number of biologically important molecules such as the amino acid histidine and the hormone histamine. Imidazole has a unique ability to participate in a variety of non-covalent interactions involving the NH group, the pyridine-like nitrogen atom or the pi-system. For many biologically active compounds containing the imidazole moiety, its participation in formation of hydrogen bond NHMIDLINE HORIZONTAL ELLIPSISO/N and following proton transfer is the key step of mechanism of their action. In this work a systematic study of the mutual influence of various paired combinations of non-covalent interactions (e.g., hydrogen bonds and pi-interactions) involving the imidazole moiety was performed by means of quantum chemistry (PW6B95-GD3/def2-QZVPD) for a series of model systems constructed based on analysis of available x-ray data. It is shown that for considered complexes formation of additional non-covalent interactions can only enhance the proton-donating ability of imidazole. At the same time, its proton-accepting ability can be both enhanced and weakened, depending on what additional interactions are added to a given system. The mutual influence of non-covalent interactions involving imidazole can be classified as weak geometric and strong energetic cooperativity-a small change in the length of non-covalent interaction formed by imidazole can strongly influence its strength. The latter can be used to develop methods for controlling the rate and selectivity of chemical reactions involving the imidazole fragment in larger systems. It is shown that the strong mutual influence of non-covalent interactions involving imidazole is due to the unique ability of the imidazole ring to effectively redistribute electron density in non-covalently bound systems with its participation. The possibilities of tuning the strength of hydrogen bonds involving the imidazole ring through the formation of additional non-covalent interactions have been systematically studied.image
引用
收藏
页码:1046 / 1060
页数:15
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共 62 条
  • [1] Imidazole as a Promising Medicinal Scaffold: Current Status and Future Direction
    Alghamdi, Sahar S.
    Suliman, Rasha S.
    Almutairi, Khlood
    Kahtani, Khawla
    Aljatli, Dimah
    [J]. DRUG DESIGN DEVELOPMENT AND THERAPY, 2021, 15 : 3289 - 3312
  • [2] Imidazoles as potential anticancer agents
    Ali, Imran
    Lone, Mohammad Nadeem
    Aboul-Enein, Haasan Y.
    [J]. MEDCHEMCOMM, 2017, 8 (09) : 1742 - 1773
  • [3] Anti-Aggregating Effect of the Naturally Occurring Dipeptide Carnosine on Aβ1-42 Fibril Formation
    Aloisi, Alessandra
    Barca, Amilcare
    Romano, Alessandro
    Guerrieri, Sara
    Storelli, Carlo
    Rinaldi, Rosaria
    Verri, Tiziano
    [J]. PLOS ONE, 2013, 8 (07):
  • [4] QUANTUM-THEORY OF ATOMS IN MOLECULES - DALTON REVISITED
    BADER, RFW
    NGUYENDANG, TT
    [J]. ADVANCES IN QUANTUM CHEMISTRY, 1981, 14 : 63 - 124
  • [5] VAN DER WAALS VOLUMES + RADII
    BONDI, A
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1964, 68 (03) : 441 - +
  • [6] Lactam Hydrogen Bonds as Control Elements in Enantioselective Transition-Metal-Catalyzed and Photochemical Reactions
    Burg, Finn
    Bach, Thorsten
    [J]. JOURNAL OF ORGANIC CHEMISTRY, 2019, 84 (14) : 8815 - 8836
  • [7] Increasing Enzyme Stability and Activity through Hydrogen Bond-Enhanced Halogen Bonds
    Carlsson, Anna-Carin C.
    Scholfield, Matthew R.
    Rowe, Rhianon K.
    Ford, Melissa Coates
    Alexander, Austin T.
    Mehl, Ryan A.
    Ho, P. Shing
    [J]. BIOCHEMISTRY, 2018, 57 (28) : 4135 - 4147
  • [8] The Distance between Minima of Electron Density and Electrostatic Potential as a Measure of Halogen Bond Strength
    Chakalov, Edem R.
    Tupikina, Elena Yu
    Ivanov, Daniil M.
    Bartashevich, Ekaterina, V
    Tolstoy, Peter M.
    [J]. MOLECULES, 2022, 27 (15):
  • [9] Geometry of nonbonded interactions involving planar groups in proteins
    Chakrabarti, Pinak
    Bhattacharyya, Rajasri
    [J]. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2007, 95 (1-3) : 83 - 137
  • [10] Predicting the Limit of Intramolecular Hydrogen Bonding with Classical Molecular Dynamics
    Colizzi, Francesco
    Hospital, Adam
    Zivanovic, Sanja
    Orozco, Modesto
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2019, 58 (12) : 3759 - 3763