Salinity stress is one of the global problems that limit crop production. The application of silicon dioxide nanoparticles (SiO2-NPs) and the inoculation of arbuscular mycorrhizal fungi (AMF) and plant growth-promoting rhizobacteria (PGPR) with wheat are novel approaches to reducing the negative effects of salinity stress. Therefore, the main objective of this experiment was to investigate the role of SiO2-NPs and the use of co-inoculation of AMF and PGPR for wheat plant tolerance under salt stress. The experiment was carried out as a factorial based on a randomized complete block design. Accordingly, a pot experiment was conducted on wheat growing under salt stress (0, 35, 70, and 105 mM NaCl), using bio-fertilizers (control, mycorrhizal fungi, Flavobacterium and Pseudomonas bacteria, co-inoculation of AMF and PGPR), and SiO2-NPs (0, 30, and 60 mg/L) as additives. The results showed that, under 105 mM salinity stress, the co-inoculation of AMF and PGPR as well as the use of SiO2-NPs enhanced chlorophyll a (8.81%), b (12.93%), total Chl (22.68%), carotenoid content (18.88%), membrane stability index (14.82%), plant height (13.37%), and spike length (13.9%) parameters compared to control treatment. The application of AMF and PGPR individually or in combination and the use of SiO2-NPs improved physiological parameters such as leaf area index, chlorophyll fluorescence parameters, anthocyanin, and chlorophyll index. Salinity stress reduced the uptake of phosphorus and K+, as well as increasing the uptake of Na+. However, co-inoculation of AMF and PGPR as well as 60 mg/L SiO2-NPs resulted in increased Si, P, and K+, as well as decreased Na+ uptake, which finally increased grain yield. Generally, this finding implies that co-inoculation of AMF and PGPR as well as the application of SiO2-NPs could be used as additives for the improvement of wheat and the uptake of nutrients under salinity stress.