Identification and Validation of Glomeruli Cellular Senescence-Related Genes in Diabetic Nephropathy by Multiomics

被引:3
|
作者
Tang, Chunyin [1 ,2 ]
Yang, Chunsong [1 ]
Wang, Peiwen [2 ]
Li, Luxin [2 ]
Lin, Yunzhu [1 ]
Yi, Qiusha [1 ]
Tang, Fengru [1 ]
Liu, Lantao [3 ]
Zhou, Wei [1 ]
Liu, Dongwen [1 ]
Zhang, Lingli [1 ]
Yuan, Xiaohuan [2 ]
机构
[1] Sichuan Univ, West China Univ Hosp 2, Key Lab Birth Defects & Related Dis Women & Childr, Dept Pharm,Evidence Based Pharm Ctr, Chengdu 610000, Peoples R China
[2] Mudanjiang Med Univ, Coll Life Sci, Mudanjiang 157000, Peoples R China
[3] Mudanjiang Med Univ, Postgrad Dept, Mudanjiang 157011, Peoples R China
来源
ADVANCED BIOLOGY | 2024年 / 8卷 / 02期
关键词
anti-aging; Cellular senescence; diabetic nephropathy; glomerulus; multiomics; DOWN-REGULATION; PREMATURE SENESCENCE; ENDOTHELIAL-CELLS; SIGNALING PATHWAY; TYROSINE KINASE; JUN AP-1; GLUCOSE; FOS; EXPRESSION; STRESS;
D O I
10.1002/adbi.202300453
中图分类号
TB3 [工程材料学]; R318.08 [生物材料学];
学科分类号
0805 ; 080501 ; 080502 ;
摘要
Accumulating evidence indicates that cellular premature senescence of the glomerulus, including endothelial cells, mesangial cells, and podocytes leads to diabetic nephropathy (DN), and DN is regarded as a clinical model of premature senescence. However, the role of cellular senescence-associated genes in the glomerulus in DN progression remains unclear. Therefore, this work aims to identify and validate potential cellular aging-related genes in the glomerulus in DN to provide novel clues for DN treatment based on anti-aging. The microarray GSE96804 dataset, including 41 diabetic glomeruli and 20 control glomeruli, is retrieved from the Gene Expression Omnibus (GEO) database and cellular senescence-related genes (CSRGs) are obtained from the GeneCards database and literature reports. Subsequently, PPI, GO, and KEGG enrichment are analyzed by screening the intersection between differentially expressed genes (DEGs) and CSRGs. scRNA-seq dataset GSE127235 is used to verify core genes expression in glomerulocytes of mice. Finally, db/db mice are utilized to validate the hub gene expression in the glomeruli, and high glucose-induced mesangial cells are used to confirm key gene expression. This study reveals that FOS and ZFP36 may play an anti-aging role in DN to ameliorate cell intracellular premature aging in mesangial cells of glomeruli. Glomeruli in a high-glucose environment are prone to trigger senescence, which leads to the development of diabetic nephropathy (DN). In DN, there are two key genes, Fos and Zfp36, that are lost in glomeruli. FOS and ZFP36 may play an anti-aging role in DN to ameliorate cell intracellular premature senescence in mesangial cells of glomeruli and are expected to serve as drug targets for the treatment of DN.image
引用
收藏
页数:15
相关论文
共 50 条
  • [21] The role of cellular senescence-related genes in Asthma: Insights from bioinformatics and animal experiments
    Zhang, Xiang
    Xiao, Ya-Li
    Shi, Xin
    Shi, Hong-Ling
    Dong, Zi-Xing
    Tang, Cun-Duo
    INTERNATIONAL IMMUNOPHARMACOLOGY, 2024, 130
  • [22] Identification and validation of immune and cuproptosis - related genes for diabetic nephropathy by WGCNA and machine learning
    Chen, Yubing
    Liao, Lijuan
    Wang, Baoju
    Wu, Zhan
    FRONTIERS IN IMMUNOLOGY, 2024, 15
  • [23] Identification and validation of a novel senescence-related biomarker for thyroid cancer to predict the prognosis and immunotherapy
    Hong, Kai
    Cen, Kenan
    Chen, Qiaoqiao
    Dai, Ying
    Mai, Yifeng
    Guo, Yangyang
    FRONTIERS IN IMMUNOLOGY, 2023, 14
  • [24] Comprehensive Analysis of Cellular Senescence-Related Genes in Prognosis, Molecular Characterization and Immunotherapy of Hepatocellular Carcinoma
    Liang Sun
    Zitao Liu
    Ke Ning
    Zhipeng Wu
    Zhendong Chen
    Zhengyi Wu
    Xiangbao Yin
    Biological Procedures Online, 24
  • [25] Correlation between Mitochondria-Associated Endoplasmic Reticulum Membrane-Related Genes and Cellular Senescence-Related Genes in Osteoarthritis
    Li, Hui-Min
    Wang, Chenhuan
    Liu, Qixue
    Tong, Zhicheng
    Song, Binghua
    Wei, Wei
    Teng, Chong
    ACS OMEGA, 2024, 9 (17): : 19169 - 19181
  • [26] Cellular senescence-Related genes define the immune microenvironment and molecular characteristics in severe asthma patients
    Lin, Qibin
    Zheng, Zhishui
    Ni, Haiyang
    Xu, Yaqing
    Nie, Hanxiang
    GENE, 2024, 919
  • [27] Comprehensive Analysis of Cellular Senescence-Related Genes in Prognosis, Molecular Characterization and Immunotherapy of Hepatocellular Carcinoma
    Sun, Liang
    Liu, Zitao
    Ning, Ke
    Wu, Zhipeng
    Chen, Zhendong
    Wu, Zhengyi
    Yin, Xiangbao
    BIOLOGICAL PROCEDURES ONLINE, 2022, 24 (01)
  • [28] Cellular senescence-related gene signature as a valuable predictor of prognosis in hepatocellular carcinoma
    Zhang, Shuqiao
    Zheng, Yilu
    Li, Xinyu
    Zhang, Shijun
    Hu, Hao
    Kuang, Weihong
    AGING-US, 2023, 15 (08): : 3064 - 3093
  • [29] Identification and validation of the cellular senescence-related molecular subtypes of triple negative breast cancer via integrating bulk and single-cell RNA sequencing data
    Ju, Gaoda
    Zeng, Kai
    Lu, Linlin
    Diao, Han
    Wang, Hao
    Li, Xiaomin
    Zhou, Tianhao
    AMERICAN JOURNAL OF CANCER RESEARCH, 2023, 13 (02): : 569 - +
  • [30] Identification of a novel cellular senescence-related signature for the prediction of prognosis and immunotherapy response in colon cancer
    Dai, Longfei
    Wang, Xu
    Bai, Tao
    Liu, Jianjun
    Chen, Bo
    Li, Ting
    Yang, Wenqi
    FRONTIERS IN GENETICS, 2022, 13