Non-annotated renal histopathological image analysis with deep ensemble learning

被引:7
作者
Koo, Jia Chun [1 ]
Ke, Qi [2 ]
Hum, Yan Chai [1 ]
Goh, Choon Hian [1 ]
Lai, Khin Wee [3 ]
Yap, Wun-She [1 ]
Tee, Yee Kai [1 ,4 ]
机构
[1] Univ Tunku Abdul Rahman, Lee Kong Chian Fac Engn & Sci, Kajang, Malaysia
[2] Guangxi Univ Finance & Econ, Sch Big Data & Artificial Intelligence, Nanning, Peoples R China
[3] Univ Malaya, Fac Engn, Dept Biomed Engn, Kuala Lumpur, Malaysia
[4] Univ Tunku Abdul Rahman, Lee Kong Chian Fac Engn & Sci, Jalan Sungai Long, Kajang 43000, Selangor, Malaysia
关键词
Deep learning; transfer learning; ensemble learning; histopathological image; renal cancer; CLASSIFICATION; CANCER; SYSTEM;
D O I
10.21037/qims-23-46
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
Background: Renal cancer is one of the leading causes of cancer-related deaths worldwide, and early detection of renal cancer can significantly improve the patients' survival rate. However, the manual analysis of renal tissue in the current clinical practices is labor-intensive, prone to inter-pathologist variations and easy to miss the important cancer markers, especially in the early stage.Methods: In this work, we developed deep convolutional neural network (CNN) based heterogeneous ensemble models for automated analysis of renal histopathological images without detailed annotations. The proposed method would first segment the histopathological tissue into patches with different magnification factors, then classify the generated patches into normal and tumor tissues using the pre-trained CNNs and lastly perform the deep ensemble learning to determine the final classification. The heterogeneous ensemble models consisted of CNN models from five deep learning architectures, namely VGG, ResNet, DenseNet, MobileNet, and EfficientNet. These CNN models were fine-tuned and used as base learners, they exhibited different performances and had great diversity in histopathological image analysis. The CNN models with superior classification accuracy (Acc) were then selected to undergo ensemble learning for the final classification. The performance of the investigated ensemble approaches was evaluated against the state-ofthe-art literature.Results: The performance evaluation demonstrated the superiority of the proposed best performing ensembled model: five-CNN based weighted averaging model, with an Acc (99%), specificity (Sp) (98%), F1-score (F1) (99%) and area under the receiver operating characteristic (ROC) curve (98%) but slightly inferior recall (Re) (99%) compared to the literature.Conclusions: The outstanding robustness of the developed ensemble model with a superiorly highperformance scores in the evaluated metrics suggested its reliability as a diagnosis system for assisting the pathologists in analyzing the renal histopathological tissues. It is expected that the proposed ensemble deep CNN models can greatly improve the early detection of renal cancer by making the diagnosis process more efficient, and less misdetection and misdiagnosis; subsequently, leading to higher patients' survival rate.
引用
收藏
页码:5902 / 5920
页数:19
相关论文
共 44 条
  • [31] Glioma Grading via Analysis of Digital Pathology Images Using Machine Learning
    Rathore, Saima
    Niazi, Tamim
    Iftikhar, Muhammad Aksam
    Chaddad, Ahmad
    [J]. CANCERS, 2020, 12 (03)
  • [32] The ISUP system of staging, grading and classification of renal cell neoplasia
    Samaratunga, Hemamali
    Gianduzzo, Troy
    Delahunt, Brett
    [J]. JOURNAL OF KIDNEY CANCER AND VHL, 2014, 1 (03): : 26 - 39
  • [33] Deep Learning in Image Classification using Residual Network (ResNet) Variants for Detection of Colorectal Cancer
    Sarwinda, Devvi
    Paradisa, Radifa Hilya
    Bustamam, Alhadi
    Anggia, Pinkie
    [J]. 5TH INTERNATIONAL CONFERENCE ON COMPUTER SCIENCE AND COMPUTATIONAL INTELLIGENCE 2020, 2021, 179 : 423 - 431
  • [34] Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries
    Sung, Hyuna
    Ferlay, Jacques
    Siegel, Rebecca L.
    Laversanne, Mathieu
    Soerjomataram, Isabelle
    Jemal, Ahmedin
    Bray, Freddie
    [J]. CA-A CANCER JOURNAL FOR CLINICIANS, 2021, 71 (03) : 209 - 249
  • [35] Szegedy C., 2014, ARXIV
  • [36] Convolutional Neural Networks for Medical Image Analysis: Full Training or Fine Tuning?
    Tajbakhsh, Nima
    Shin, Jae Y.
    Gurudu, Suryakanth R.
    Hurst, R. Todd
    Kendall, Christopher B.
    Gotway, Michael B.
    Liang, Jianming
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2016, 35 (05) : 1299 - 1312
  • [37] Joint Disaster Classification and Victim Detection using Multi-Task Learning
    Tham, Mau-Luen
    Wong, Yi Jie
    Kwan, Ban Hoe
    Owada, Yasunori
    Sein, Myint Myint
    Chang, Yoong Choon
    [J]. 2021 IEEE 12TH ANNUAL UBIQUITOUS COMPUTING, ELECTRONICS & MOBILE COMMUNICATION CONFERENCE (UEMCON), 2021, : 407 - 412
  • [38] Performance analysis of seven Convolutional Neural Networks (CNNs) with transfer learning for Invasive Ductal Carcinoma (IDC) grading in breast histopathological images
    Voon, Wingates
    Hum, Yan Chai
    Tee, Yee Kai
    Yap, Wun-She
    Salim, Maheza Irna Mohamad
    Tan, Tian Swee
    Mokayed, Hamam
    Lai, Khin Wee
    [J]. SCIENTIFIC REPORTS, 2022, 12 (01)
  • [39] Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks
    Wei, Jason W.
    Tafe, Laura J.
    Linnik, Yevgeniy A.
    Vaickus, Louis J.
    Tomita, Naofumi
    Hassanpour, Saeed
    [J]. SCIENTIFIC REPORTS, 2019, 9 (1)
  • [40] An Optimized Multi-Task Learning Model for Disaster Classification and Victim Detection in Federated Learning Environments
    Wong, Yi Jie
    Tham, Mau-Luen
    Kwan, Ban-Hoe
    Gnanamuthu, Ezra Morris Abraham
    Owada, Yasunori
    [J]. IEEE ACCESS, 2022, 10 : 115930 - 115944