The plastisphere microbiome in alpine soils alters the microbial genetic potential for plastic degradation and biogeochemical cycling

被引:49
作者
Ruthi, Joel [1 ,2 ]
Rast, Basil M. [1 ]
Qi, Weihong [3 ,4 ,5 ]
Perez-Mon, Carla [1 ]
Pardi-Comensoli, Lucrezia [6 ]
Brunner, Ivano [1 ]
Frey, Beat [1 ]
机构
[1] Swiss Fed Inst Forest Snow & Landscape Res WSL, CH-8903 Birmensdorf, Switzerland
[2] Swiss Fed Inst Technol, Zurich, Switzerland
[3] Swiss Fed Inst Technol, Funct Genom Ctr Zurich, Zurich, Switzerland
[4] Univ Zurich, Zurich, Switzerland
[5] Swiss Inst Bioinformat SIB, Geneva, Switzerland
[6] Swiss Fed Labs Mat Sci & Technol Empa, Dubendorf, Switzerland
基金
瑞士国家科学基金会;
关键词
Plastisphere; Metagenomics; Biodegradable plastics; Alpine; KNOWLEDGE GAPS; BIODEGRADATION; ACID; MICROORGANISMS; MICROPLASTICS; COMMUNITIES; CUTINASES; HYDROLASE; DATABASE; ENZYME;
D O I
10.1016/j.jhazmat.2022.129941
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Plastic is exceedingly abundant in soils, but little is known about its ecological consequences for soil microbiome functioning. Here we report the impacts of polyethylene and biodegradable Ecovio and BI-OPL plastic films buried in alpine soils for 5 months on the genetic potential of the soil microbiome using shotgun metagenomics. The microbiome was more affected by Ecovio and BI-OPL than by polyethylene. Fungi, alpha- and 8-Proteobacteria dominated on the biodegradable films. Ecovio and BI-OPL showed signs of degradation after the incubation, whereas polyethylene did not. Genes involved in cellular processes and signaling (intracellular trafficking, secretion, vesicular transport), as well as metabolism (carbohydrate, lipid and secondary metabolism), were enriched in the plastisphere. Several alpha/8-hydrolase gene families (cutinase_like, polyesterase-lipase-cutinase, carboxylesterase), which encode enzymes essential to plastic degradation, and carbohydrate-active genes involved in lignin and murein degradation increased on Ecovio and BI-OPL films. Enriched nitrogen fixation and organic N degradation and synthesis genes and decreased nitrification genes on Ecovio altered the biogeochemical cycling, leading to higher ammonium concentrations and depletion of nitrite and nitrate in the soil. Our
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页数:14
相关论文
共 102 条
[1]   Root exudates increase soil respiration and alter microbial community structure in alpine permafrost and active layer soils [J].
Adamczyk, Magdalene ;
Ruthi, Joel ;
Frey, Beat .
ENVIRONMENTAL MICROBIOLOGY, 2021, 23 (04) :2152-2168
[2]   Biodegradation of plastics: current scenario and future prospects for environmental safety [J].
Ahmed, Temoor ;
Shahid, Muhammad ;
Azeem, Farrukh ;
Rasul, Ijaz ;
Shah, Asad Ali ;
Noman, Muhammad ;
Hameed, Amir ;
Manzoor, Natasha ;
Manzoor, Irfan ;
Muhammad, Sher .
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 2018, 25 (08) :7287-7298
[3]   Plastic wastes biodegradation: Mechanisms, challenges and future prospects [J].
Ali, Sameh S. ;
Elsamahy, Tamer ;
Al-Tohamy, Rania ;
Zhu, Daochen ;
Mahmoud, Yehia A-G ;
Koutra, Eleni ;
Metwally, Metwally A. ;
Kornaros, Michael ;
Sun, Jianzhong .
SCIENCE OF THE TOTAL ENVIRONMENT, 2021, 780
[4]   Atmospheric transport and deposition of microplastics in a remote mountain catchment [J].
Allen, Steve ;
Allen, Deonie ;
Phoenix, Vernon R. ;
Le Roux, Gael ;
Jimenez, Pilar Durantez ;
Simonneau, Anaelle ;
Binet, Stephane ;
Galop, Didier .
NATURE GEOSCIENCE, 2019, 12 (05) :339-+
[5]   Ecology of the plastisphere [J].
Amaral-Zettler, Linda A. ;
Zettler, Erik R. ;
Mincer, Tracy J. .
NATURE REVIEWS MICROBIOLOGY, 2020, 18 (03) :139-151
[6]   First evidence of microplastic contamination in the supraglacial debris of an alpine glacier [J].
Ambrosini, Roberto ;
Azzoni, Roberto Sergio ;
Pittino, Francesca ;
Diolaiuti, Guglielmina ;
Franzetti, Andrea ;
Parolini, Marco .
ENVIRONMENTAL POLLUTION, 2019, 253 :297-301
[7]   Lignocellulose degradation: An overview of fungi and fungal enzymes involved in lignocellulose degradation [J].
Andlar, Martina ;
Rezic, Tonci ;
Mardetko, Nenad ;
Kracher, Daniel ;
Ludwig, Roland ;
Santek, Bozidar .
ENGINEERING IN LIFE SCIENCES, 2018, 18 (11) :768-778
[8]  
[Anonymous], 2018, S ANDREWS FASTQC QUA
[9]   To assemble or not to resemble-A validated Comparative Metatranscriptomics Workflow (CoMW) [J].
Anwar, Muhammad Zohaib ;
Lanzen, Anders ;
Bang-Andreasen, Toke ;
Jacobsen, Carsten Suhr .
GIGASCIENCE, 2019, 8 (08) :1-10
[10]   Purification and characterization of new bio-plastic degrading enzyme from Burkholderia cepacia DP1 [J].
Azami, Nor Azura ;
Aryani, Wirjon Ira ;
Aik-Hong, Teh ;
Amirul, A. A. .
PROTEIN EXPRESSION AND PURIFICATION, 2019, 155 :35-42