amide proton transfer;
chemical exchange saturation transfer;
machine learning;
tumor;
EXCHANGE SATURATION-TRANSFER;
IN-VIVO;
TRANSFER CEST;
TRANSFER MRI;
HUMAN BRAIN;
RESONANCE;
ENHANCEMENT;
RELAXATION;
CONTRAST;
ORIGINS;
D O I:
10.1002/mrm.29970
中图分类号:
R8 [特种医学];
R445 [影像诊断学];
学科分类号:
1002 ;
100207 ;
1009 ;
摘要:
Purpose: Machine learning (ML) has been increasingly used to quantify CEST effect. ML models are typically trained using either measured data or fully simulated data. However, training with measured data often lacks sufficient training data, whereas training with fully simulated data may introduce bias because of limited simulations pools. This study introduces a new platform that combines simulated and measured components to generate partially synthetic CEST data, and to evaluate its feasibility for training ML models to predict amide proton transfer (APT) effect.Methods: Partially synthetic CEST signals were created using an inverse summation of APT effects from simulations and the other components from measurements. Training data were generated by varying APT simulation parameters and applying scaling factors to adjust the measured components, achieving a balance between simulation flexibility and fidelity. First, tissue-mimicking CEST signals along with ground truth information were created using multiple-pool model simulations to validate this method. Second, an ML model was trained individually on partially synthetic data, in vivo data, and fully simulated data, to predict APT effect in rat brains bearing 9 L tumors.Results: Experiments on tissue-mimicking data suggest that the ML method using the partially synthetic data is accurate in predicting APT. In vivo experiments suggest that our method provides more accurate and robust prediction than the training using in vivo data and fully synthetic data.Conclusion: Partially synthetic CEST data can address the challenges in conventional ML methods.
机构:
Charite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, GermanyCharite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, Germany
Bothe, T. L.
Patzak, A.
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Charite Univ Med Berlin, Inst Translat Physiol, Berlin, GermanyCharite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, Germany
Patzak, A.
Opatz, O. S.
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Charite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, GermanyCharite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, Germany
Opatz, O. S.
Heinz, V.
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机构:
Charite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, GermanyCharite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, Germany
Heinz, V.
Pilz, N.
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机构:
Charite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, Germany
Hannover Med Sch, Dept Cardiol & Angiol, Hannover, GermanyCharite Univ Med Berlin, Inst Physiol, Ctr Space Med & Extreme Environm Berlin, Berlin, Germany
机构:
Univ Michigan, Ann Arbor, MI 48128 USA
Univ Brunei Darussalam, PAPRSB Inst Hlth Sci, Bandar Seri Begawan, BruneiUniv Michigan, Ann Arbor, MI 48128 USA
Abdul Rahman, Hanif
Ottom, Mohammad Ashraf
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机构:
Univ Michigan, Ann Arbor, MI 48128 USA
Yarmouk Univ, Irbid, JordanUniv Michigan, Ann Arbor, MI 48128 USA
Ottom, Mohammad Ashraf
Dinov, Ivo D.
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机构:
Univ Michigan, Ann Arbor, MI 48128 USAUniv Michigan, Ann Arbor, MI 48128 USA
机构:
Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Li, Honghao
Su, Dongqing
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机构:
Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Su, Dongqing
Zhang, Xinpeng
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Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Zhang, Xinpeng
He, Yuanyuan
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Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
He, Yuanyuan
Luo, Xu
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机构:
Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Luo, Xu
Xiong, Yuqiang
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机构:
Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Xiong, Yuqiang
Zou, Min
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机构:
Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Zou, Min
Wei, Huiyan
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机构:
Harbin Med Univ, Biotechnol Expt Ctr, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Wei, Huiyan
Wen, Shaoran
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机构:
Inner Mongolia Univ, Coll Life Sci, State Key Lab Reprod Regulat & Breeding Grassland, Hohhot 010070, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Wen, Shaoran
Xi, Qilemuge
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机构:
Inner Mongolia Univ, Coll Life Sci, State Key Lab Reprod Regulat & Breeding Grassland, Hohhot 010070, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Xi, Qilemuge
Zuo, Yongchun
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h-index: 0
机构:
Inner Mongolia Univ, Coll Life Sci, State Key Lab Reprod Regulat & Breeding Grassland, Hohhot 010070, Peoples R China
Inner Mongolia Int Mongolian Hosp, Hohhot 010065, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China
Zuo, Yongchun
Yang, Lei
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机构:
Harbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R ChinaHarbin Med Univ, Coll Bioinformat Sci & Technol, Harbin 150081, Peoples R China