External Validation and Retraining of DeepBleed: The First Open-Source 3D Deep Learning Network for the Segmentation of Spontaneous Intracerebral and Intraventricular Hemorrhage

被引:10
作者
Cao, Haoyin [1 ]
Morotti, Andrea [2 ]
Mazzacane, Federico [3 ,4 ]
Desser, Dmitriy [5 ,6 ]
Schlunk, Frieder [5 ,6 ]
Guettler, Christopher [5 ,6 ]
Kniep, Helge [7 ]
Penzkofer, Tobias [1 ,8 ]
Fiehler, Jens [7 ]
Hanning, Uta [7 ]
Dell'Orco, Andrea [5 ,6 ]
Nawabi, Jawed [1 ,5 ,6 ,8 ]
机构
[1] Charite Univ Med Berlin, Humboldt Univ Berlin, Freie Univ Berlin, Dept Radiol, Charitepl 1, D-10117 Berlin, Germany
[2] ASST Spedali Civili, Dept Neurol Sci & Vis, Neurol Unit, I-25123 Brescia, Italy
[3] Univ Pavia, Dept Brain & Behav Sci, I-27100 Pavia, Italy
[4] IRCCS Fdn Mondino, UC Malattie Cerebrovasc & Stroke Unit, I-27100 Pavia, Italy
[5] Charite Sch Med, Dept Neuroradiol, D-10117 Berlin, Germany
[6] Univ Hosp Berlin, D-10117 Berlin, Germany
[7] Univ Med Ctr Hamburg Eppendorf, Dept Diagnost & Intervent Neuroradiol, D-20246 Hamburg, Germany
[8] Berlin Inst Hlth BIH, BIH Biomed Innovat Acad, D-10178 Berlin, Germany
基金
欧盟地平线“2020”;
关键词
intracerebral hemorrhage; automated segmentation; deep learning; multicenter; external validation; BLOOD-PRESSURE REDUCTION; EVACUATION MISTIE; GUIDELINE; VOLUME; SCORE; MRI;
D O I
10.3390/jcm12124005
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Background: The objective of this study was to assess the performance of the first publicly available automated 3D segmentation for spontaneous intracerebral hemorrhage (ICH) based on a 3D neural network before and after retraining. Methods: We performed an independent validation of this model using a multicenter retrospective cohort. Performance metrics were evaluated using the dice score (DSC), sensitivity, and positive predictive values (PPV). We retrained the original model (OM) and assessed the performance via an external validation design. A multivariate linear regression model was used to identify independent variables associated with the model's performance. Agreements in volumetric measurements and segmentation were evaluated using Pearson's correlation coefficients (r) and intraclass correlation coefficients (ICC), respectively. With 1040 patients, the OM had a median DSC, sensitivity, and PPV of 0.84, 0.79, and 0.93, compared to thoseo f 0.83, 0.80, and 0.91 in the retrained model (RM). However, the median DSC for infratentorial ICH was relatively low and improved significantly after retraining, at p < 0.001. ICH volume and location were significantly associated with the DSC, at p < 0.05. The agreement between volumetric measurements (r > 0.90, p > 0.05) and segmentations (ICC & GE; 0.9, p < 0.001) was excellent. Conclusion: The model demonstrated good generalization in an external validation cohort. Location-specific variances improved significantly after retraining. External validation and retraining are important steps to consider before applying deep learning models in new clinical settings.
引用
收藏
页数:14
相关论文
共 53 条
[1]   Intensive blood pressure reduction in acute cerebral haemorrhage trial (INTERACT): a randomised pilot trial [J].
Anderson, Craig S. ;
Huang, Yining ;
Wang, Ji Guang ;
Arima, Hisatomi ;
Neal, Bruce ;
Peng, Bin ;
Heeley, Emma ;
Skulina, Christian ;
Parsons, Mark W. ;
Kim, Jong Sung ;
Tao, Qing Ling ;
Li, Yue Chun ;
Jiang, Jian Dong ;
Tai, Li Wen ;
Zhang, Jin Li ;
Xu, En ;
Cheng, Yan ;
Heritier, Stephan ;
Morgenstern, Lewis B. ;
Chalmers, John .
LANCET NEUROLOGY, 2008, 7 (05) :391-399
[2]  
[Anonymous], MINIMALLY INVASIVE S
[3]  
Avants BB., 2009, Insight j, V2, P1, DOI [DOI 10.54294/UVNHIN, 10.54294/uvnhin]
[4]  
Cao H, DEEPBLEED CODE CODE
[5]   INTRACEREBRAL HEMORRHAGE [J].
CAPLAN, LR .
LANCET, 1992, 339 (8794) :656-658
[6]   Infratentorial Intracerebral Hemorrhage Relation of Location to Outcome [J].
Chen, Ruiqi ;
Wang, Xia ;
Anderson, Craig S. ;
Robinson, Thompson ;
Lavados, Pablo M. ;
Lindley, Richard I. ;
Chalmers, John ;
Delcourt, Candice .
STROKE, 2019, 50 (05) :1257-1259
[7]  
Cicchetti D.V., 1994, Psychological Assessment, V6, P284, DOI [DOI 10.1037/1040-3590.6.4.284, DOI 10.1037//1040-3590.6.4.284]
[8]  
clinicaltrials, MIND ART REM INTR HE
[9]   Comparison of ABC Methods with Computerized Estimates of Intracerebral Hemorrhage Volume: The INTERACT2 Study [J].
Delcourt, Candice ;
Carcel, Cheryl ;
Zheng, Danni ;
Sato, Shoichiro ;
Arima, Hisatomi ;
Bhaskar, Sonu ;
Janin, Pierre ;
Salman, Rustam Al-Shahi ;
Cao, Yongjun ;
Zhang, Shihong ;
Heeley, Emma ;
Davies, Leo ;
Chalmers, John ;
Anderson, Craig S. .
CEREBROVASCULAR DISEASES EXTRA, 2019, 9 (03) :148-154
[10]  
Dell'Orco, 2023, Zenodo, DOI 10.5281/ZENODO.7616199