Novel application of the ferroptosis-related genes risk model associated with disulfidptosis in hepatocellular carcinoma prognosis and immune infiltration

被引:1
作者
Wei, Jiayan [1 ]
Wang, Jinsong [1 ]
Chen, Xinyi [1 ]
Zhang, Li [2 ]
Peng, Min [1 ]
机构
[1] Wuhan Univ, Renmin Hosp, Dept Oncol, Wuhan, Hubei, Peoples R China
[2] Wuhan Univ, Sch Basic Med Sci, Basic Med Sci, Wuhan, Hubei, Peoples R China
来源
PEERJ | 2024年 / 12卷
基金
美国国家科学基金会;
关键词
Ferroptosis; Disulfidptosis; HCC; Prognosis model; Tumor microenvironment; DNA-REPLICATION; CANCER CELLS;
D O I
10.7717/peerj.16819
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Hepatocellular carcinoma (HCC) stands as the prevailing manifestation of primary liver cancer and continues to pose a formidable challenge to human well-being and longevity, owing to its elevated incidence and mortality rates. Nevertheless, the quest for reliable predictive biomarkers for HCC remains ongoing. Recent research has demonstrated a close correlation between ferroptosis and disulfidptosis, two cellular processes, and cancer prognosis, suggesting their potential as predictive factors for HCC. In this study, we employed a combination of bioinformatics algorithms and machine learning techniques, leveraging RNA sequencing data, mutation profiles, and clinical data from HCC samples in The Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO), and the International Cancer Genome Consortium (ICGC) databases, to develop a risk prognosis model based on genes associated with ferroptosis and disulfidptosis. We conducted an unsupervised clustering analysis, calculating a risk score (RS) to predict the prognosis of HCC using these genes. Clustering analysis revealed two distinct HCC clusters, each characterized by significantly different prognostic and immune features. The median RS stratified HCC samples in the TCGA, GEO, and ICGC cohorts into high -and low -risk groups. Importantly, RS emerged as an independent prognostic factor in all three cohorts, with the high -risk group demonstrating poorer prognosis and a more active immunosuppressive microenvironment. Additionally, the high -risk group exhibited higher expression levels of tumor mutation burden (TMB), immune checkpoints (ICs), and human leukocyte antigen (HLA), suggesting a heightened responsiveness to immunotherapy. A cancer stem cell infiltration analysis revealed a higher similarity between tumor cells and stem cells in the high -risk group. Furthermore, drug sensitivity analysis highlighted significant differences in response to antitumor drugs between the two risk groups. In summary, our risk prognostic model, constructed based on ferroptosis-related genes associated with disulfidptosis, effectively predicts HCC prognosis. These findings hold potential implications for patient stratification and clinical decision -making, offering valuable theoretical in this field.
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页数:33
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  • [1] Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk
    Abdel-Aziz, Mahmoud I.
    Thorsen, Jonathan
    Hashimoto, Simone
    Vijverberg, Susanne J. H.
    Neerincx, Anne H.
    Brinkman, Paul
    van Aalderen, Wim
    Stokholm, Jakob
    Rasmussen, Morten Arendt
    Roggenbuck-Wedemeyer, Michael
    Vissing, Nadja H.
    Mortensen, Martin Steen
    Brejnrod, Asker Daniel
    Fleming, Louise J.
    Murray, Clare S.
    Fowler, Stephen J.
    Frey, Urs
    Bush, Andrew
    Singer, Florian
    Hedlin, Gunilla
    Nordlund, Bjorn
    Shaw, Dominick E.
    Chung, Kian Fan
    Adcock, Ian M.
    Djukanovic, Ratko
    Auffray, Charles
    Bansal, Aruna T.
    Sousa, Ana R.
    Wagers, Scott S.
    Chawes, Bo Lund
    Bonnelykke, Klaus
    Sorensen, Soren Johannes
    Kraneveld, Aletta D.
    Sterk, Peter J.
    Roberts, Graham
    Bisgaard, Hans
    Maitland-van der Zee, Anke H.
    [J]. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2023, 208 (02) : 142 - 154
  • [2] NFS1 undergoes positive selection in lung tumours and protects cells from ferroptosis
    Alvarez, Samantha W.
    Sviderskiy, Vladislav O.
    Terzi, Erdem M.
    Papagiannakopoulos, Thales
    Moreira, Andre L.
    Adams, Sylvia
    Sabatini, David M.
    Birsoy, Kivanc
    Possemato, Richard
    [J]. NATURE, 2017, 551 (7682) : 639 - +
  • [3] Ferroptosis at the crossroads of cancer-acquired drug resistance and immune evasion
    Angeli, Jose Pedro Friedmann
    Krysko, Dmitri, V
    Conrad, Marcus
    [J]. NATURE REVIEWS CANCER, 2019, 19 (07) : 405 - 414
  • [4] Challenges in liver cancer and possible treatment approaches
    Anwanwan, David
    Singh, Santosh Kumar
    Singh, Shriti
    Saikam, Varma
    Singh, Rajesh
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER, 2020, 1873 (01):
  • [5] Conserved pan-cancer microenvironment subtypes predict response to immunotherapy
    Bagaev, Alexander
    Kotlov, Nikita
    Nomie, Krystle
    Svekolkin, Viktor
    Gafurov, Azamat
    Isaeva, Olga
    Osokin, Nikita
    Kozlov, Ivan
    Frenkel, Felix
    Gancharova, Olga
    Almog, Nava
    Tsiper, Maria
    Ataullakhanov, Ravshan
    Fowler, Nathan
    [J]. CANCER CELL, 2021, 39 (06) : 845 - +
  • [6] High STMN1 Expression is Associated with Cancer Progression and Chemo-Resistance in Lung Squamous Cell Carcinoma
    Bao, Pinjie
    Yokobori, Takehiko
    Altan, Bolag
    Iijima, Misaki
    Azuma, Youko
    Onozato, Ryoichi
    Yajima, Toshiki
    Watanabe, Akira
    Mogi, Akira
    Shimizu, Kimihiro
    Nagashima, Toshiteru
    Ohtaki, Yoichi
    Obayashi, Kai
    Nakazawa, Seshiru
    Bai, Tuya
    Kawabata-Iwakawa, Reika
    Asao, Takayuki
    Kaira, Kyoichi
    Nishiyama, Masahiko
    Kuwano, Hiroyuki
    [J]. ANNALS OF SURGICAL ONCOLOGY, 2017, 24 (13) : 4017 - 4024
  • [7] Iron addiction: a novel therapeutic target in ovarian cancer
    Basuli, D.
    Tesfay, L.
    Deng, Z.
    Paul, B.
    Yamamoto, Y.
    Ning, G.
    Xian, W.
    McKeon, F.
    Lynch, M.
    Crum, C. P.
    Hegde, P.
    Brewer, M.
    Wang, X.
    Miller, L. D.
    Dyment, N.
    Torti, F. M.
    Torti, S. V.
    [J]. ONCOGENE, 2017, 36 (29) : 4089 - 4099
  • [8] DNA replication and cancer: From dysfunctional replication origin activities to therapeutic opportunities
    Boyer, Anne-Sophie
    Walter, David
    Sorensen, Claus Storgaard
    [J]. SEMINARS IN CANCER BIOLOGY, 2016, 37-38 : 16 - 25
  • [9] Targeting macrophages: therapeutic approaches in cancer
    Cassetta, Luca
    Pollard, Jeffrey W.
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2018, 17 (12) : 887 - 904
  • [10] The multifaceted role of ferroptosis in liver disease
    Chen, Junyi
    Li, Xiaopeng
    Ge, Chaodong
    Min, Junxia
    Wang, Fudi
    [J]. CELL DEATH AND DIFFERENTIATION, 2022, 29 (03) : 467 - 480