Eighteen mitochondrial genomes of Syrphidae (Insecta: Diptera: Brachycera) with a phylogenetic analysis of Muscomorpha

被引:9
作者
Li, Hu [1 ]
Yan, Yan [1 ]
Li, Juan [1 ]
机构
[1] Shaanxi Univ Technol, State Key Lab Biol Resources & Ecol Environm Qinli, Shaanxi Key Lab Bioresources, Sch Biol Sci & Engn,Qinling Bashan Mt Bioresources, Hanzhong, Shaanxi, Peoples R China
来源
PLOS ONE | 2023年 / 18卷 / 01期
关键词
SYRPHOIDEA DIPTERA; FLIES DIPTERA; RNA GENES; SEQUENCE; ORGANIZATION; EVOLUTION; FLY; DNA; CYCLORRHAPHA; MORPHOLOGY;
D O I
10.1371/journal.pone.0278032
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this study, 18 mitochondrial genomes (mitogenomes) of Syrphidae were sequenced. These mitogenomes ranged from 15,648 to 16,405 bp and contained 37 genes that were similar to those from other Syrphidae species. Most protein-coding genes (PCGs) started with a standard ATN codon and ended with TAA/G. All transfer RNAs (tRNAs) could be folded into the cloverleaf secondary structure except tRNA-Ser (AGN), which lacks a dihydrouridine arm. The secondary structures of ribosomal RNAs (rRNAs) were predicted. Six domains (III is absent in arthropods) and 44 helices were included in the 16S rRNA, and three domains and 24 helices were included in the 12S rRNA. We found three conserved fragments in all syrphid mitogenomes. Phylogenetic analyses were performed based on the nucleotide data of 13 PCGs and two rRNAs from 76 Muscomorpha and three outgroup species. In results the paraphyly of Aschiza and Schizophora were supported, the Acalyptratae was also paraphyletic but the relationships of its superfamilies were difficult to determine, the monophyly of Calyptratea was supported with the relationships of Oestroidea and Muscoidea need to be further reconsidered. Within Syrphidae the monophyly of family level was supported, the Syrphinae were clustered into one branch, while the paraphyly of Eristalinae was still well supported.
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页数:26
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