Molecular methods for colorectal cancer screening: Progress with next-generation sequencing evolution

被引:9
作者
Abbes, Salma [1 ]
Baldi, Simone [2 ]
Sellami, Hayet [3 ]
Amedei, Amedeo [2 ,4 ]
Keskes, Leila [5 ]
机构
[1] Univ Sfax, Lab Parasit & Fungal Mol Biol, Sfax 3029, Tunisia
[2] Univ Florence, Dept Expt & Clin Med, Viale G Pieraccini 6, I-50134 Florence, Italy
[3] Univ Sfax, Drosophila Res Unit, Parasitol & Mycol Lab, Sfax 3029, Tunisia
[4] Careggi Univ Hosp, SOD Interdisciplinary Internal Med, I-50134 Florence, Italy
[5] Univ Sfax, Lab Human Mol Genet, Sfax 3029, Tunisia
关键词
Colorectal cancer; Gut microbiota; Colorectal cancer screening; Next-generation sequencing; GENOME-WIDE ASSOCIATION; DROPLET DIGITAL PCR; FECAL IMMUNOCHEMICAL TESTS; CIRCULATING TUMOR DNA; STOOL DNA; MICROSATELLITE INSTABILITY; GUT MICROBIOTA; CLINICAL-PERFORMANCE; MUTATION DETECTION; RNA;
D O I
10.4251/wjgo.v15.i3.425
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Currently, colorectal cancer (CRC) represents the third most common malignancy and the second most deadly cancer worldwide, with a higher incidence in developed countries. Like other solid tumors, CRC is a heterogeneous genomic disease in which various alterations, such as point mutations, genomic rearrangements, gene fusions or chromosomal copy number alterations, can contribute to the disease development. However, because of its orderly natural history, easily accessible onset location and high lifetime incidence, CRC is ideally suited for preventive intervention, but the many screening efforts of the last decades have been compromised by performance limitations and low penetrance of the standard screening tools. The advent of next-generation sequencing (NGS) has both facilitated the identification of previously unrecognized CRC features such as its relationship with gut microbial pathogens and revolutionized the speed and throughput of cataloguing CRC-related genomic alterations. Hence, in this review, we summarized the several diagnostic tools used for CRC screening in the past and the present, focusing on recent NGS approaches and their revolutionary role in the identification of novel genomic CRC characteristics, the advancement of understanding the CRC carcinogenesis and the screening of clinically actionable targets for personalized medicine.
引用
收藏
页码:425 / 442
页数:18
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