Characterization and genome analysis of Vibrio phage vB_VhaP_PG11, representing a new viral genus

被引:2
作者
Jing, Yajun [1 ,2 ]
Guo, Ruizhe [2 ,3 ]
Wang, Hongmin [2 ,3 ]
Liang, Yantao [2 ,3 ,4 ]
Liu, Yundan [2 ,3 ]
Feng, Yifei [2 ]
Ma, Qin [2 ]
Shao, Hongbing [2 ,3 ,4 ]
Sung, Yeong Yik [4 ,5 ]
Mok, Wen Jye [4 ,5 ]
Wong, Li Lian [4 ,5 ]
Zhang, Yu-Zhong [2 ,6 ]
McMinn, Andrew [2 ,3 ,7 ]
Wang, Min [1 ,2 ,3 ,4 ,8 ]
Xing, Jinyan [1 ]
机构
[1] Qingdao Univ, Affiliated Hosp, Dept Crit Care Med, Qingdao, Peoples R China
[2] Ocean Univ China, Coll Marine Life Sci, Qingdao, Peoples R China
[3] Ocean Univ China, Inst Evolut & Marine Biodivers, Frontiers Sci Ctr Deep Ocean Multispheres & Earth, Ctr Ocean Carbon Neutral, Qingdao, Peoples R China
[4] UMT OUC Joint Acad Ctr Marine Studies, Qingdao, Peoples R China
[5] Univ Malaysia Terengganu, Inst Marine Biotechnol, Kuala Terengganu, Malaysia
[6] Shandong Univ, Marine Biotechnol Res Ctr, State Key Lab Microbial Technol, Qingdao, Peoples R China
[7] Univ Tasmania, Inst Marine, Antarctic Studies, Hobart, Tas, Australia
[8] Ocean Univ China, Haide Coll, Qingdao, Peoples R China
基金
中国国家自然科学基金;
关键词
vibrio phage; genomic and comparative genomic analysis; phylogenetic analysis; schitoviridae; qingschitovirus; MARINE VIRUSES; PROCHLOROCOCCUS; BACTERIOPHAGES; PREVALENCE; SEQUENCE;
D O I
10.3389/fmars.2022.1092917
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Vibrio is a kind of common gram-negative bacteria, which is widely distributed in marine and estuarine environments. In the study, a novel marine phage vB_VhaP_PG11, infecting Vibrio hangzhouensis, was isolated from the offshore waters of Qingdao, China. vB_VhaP_PG11 is a double-stranded DNA phage. The whole genome proteomic tree shows that vB_VhaP_PG11 phage is related to two Vibrio phages, Vibrio phage 1.238.A._10N.261.52.F10 and Vibrio phage 1.245.O._10N.261.54.C7, but with low homology. Their amino acids identity with vB_VhaP_PG11 is 42.77 and 41.49% respectively. The prediction results of genome-blast distance phylogeny (GBDP) and the analysis gene-sharing network indicate that vB_VhaP_PG11 belongs to a new genus in Schitoviridae, named Qingschitovirus. The study of Vibrio phage vB_VhaP_PG11 provides basic information contributing to a better understanding of interactions between Vibrio phages and their hosts and helps analyze unknown viral sequences in the metagenomic database.
引用
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页数:9
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