Deep learning-based size prediction for optical trapped nanoparticles and extracellular vesicles from limited bandwidth camera detection

被引:6
作者
Boateng, Derrick [1 ]
Chu, Kaiqin [2 ]
Smith, Zachary J. [3 ,4 ]
Du, Jun [1 ]
Dai, Yichuan [4 ,5 ]
机构
[1] Univ Sci & Technol China, Natl Engn Res Ctr Speech & Language Informat Proc, Dept Elect Engn & Informat Sci, Hefei, Peoples R China
[2] Univ Sci & Technol China, Suzhou Inst Adv Res, Hefei, Peoples R China
[3] Univ Sci & Technol China, Key Lab Precis Sci Instrumentat Anhui Higher Educ, Dept Precis Machinery & Precis Instrumentat, Hefei, Peoples R China
[4] Univ Sci & Technol China, Dept Precis Machinery & Precis Instrumentat, Hefei, Peoples R China
[5] Nanchang Univ, Dept Adv Mfg, Nanchang, Peoples R China
基金
中国国家自然科学基金;
关键词
HIGH-SPEED CAMERA; REFRACTIVE-INDEX; CULTURE FLUID; CALIBRATION; RANGE;
D O I
10.1364/BOE.501430
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Due to its ability to record position, intensity, and intensity distribution information, camera -based monitoring of nanoparticles in optical traps can enable multi -parametric morphooptical characterization at the single -particle level. However, blurring due to the relatively long (10s of microsecond) integration times and aliasing from the resulting limited temporal bandwidth affect the detected particle position when considering nanoparticles in traps with strong stiffness, leading to inaccurate size predictions. Here, we propose a ResNet-based method for accurate size characterization of trapped nanoparticles, which is trained by considering only simulated time series data of nanoparticles' constrained Brownian motion. Experiments prove the method outperforms state -of -art sizing algorithms such as adjusted Lorentzian fitting or CNN -based networks on both standard nanoparticles and extracellular vesicles (EVs), as well as maintains good accuracy even when measurement times are relatively short (<1s per particle). On samples of clinical EVs, our network demonstrates a well -generalized ability to accurately determine the EV size distribution, as confirmed by comparison with gold -standard nanoparticle tracking analysis (NTA). Furthermore, by combining the sizing network with still frame images from high-speed video, the camera -based optical tweezers have the unique capacity to quantify both the size and refractive index of bio-nanoparticles at the single -particle level. These experiments prove the proposed sizing network as an ideal path for predicting the morphological heterogeneity of bio-nanoparticles in optical potential trapping -related measurements. (c) 2023 Optica Publishing Group under the terms of the Optica Open Access Publishing Agreement
引用
收藏
页码:1 / 13
页数:13
相关论文
共 38 条
[1]   Single-Nanoparticle Tracking with Angstrom Localization Precision and Microsecond Time Resolution [J].
Ando, Jun ;
Nakamura, Akihiko ;
Visootsat, Akasit ;
Yamamoto, Mayuko ;
Song, Chihong ;
Murata, Kazuyoshi ;
Iino, Ryota .
BIOPHYSICAL JOURNAL, 2018, 115 (12) :2413-2427
[2]  
Ba J, 2014, ACS SYM SER
[3]   Expanding the Optical Trapping Range of Lipid Vesicles to the Nanoscale [J].
Bendix, Poul M. ;
Oddershede, Lene B. .
NANO LETTERS, 2011, 11 (12) :5431-5437
[4]  
Boateng D., 2023, Deep learning-based size prediction for optical trapped nanoparticles and extracellular vesicles from limited bandwidth camera detection: code
[5]  
Bohren C.F., 2008, Absorption and Scattering of Light by Small Particles
[6]   A comparison of methods for the isolation and separation of extracellular vesicles from protein and lipid particles in human serum [J].
Brennan, K. ;
Martin, K. ;
FitzGerald, S. P. ;
O'Sullivan, J. ;
Wu, Y. ;
Blanco, A. ;
Richardson, C. ;
Mc Gee, M. M. .
SCIENTIFIC REPORTS, 2020, 10 (01)
[7]   Hybrid Principal Component Analysis Denoising Enables Rapid, Label-Free Morpho-Chemical Quantification of Individual Nanoliposomes [J].
Dai, Yichuan ;
Yu, Yajun ;
Wang, Xianli ;
Jiang, Ziling ;
Chen, Yulan ;
Chu, Kaiqin ;
Smith, Zachary J. .
ANALYTICAL CHEMISTRY, 2022, 94 (41) :14232-14241
[8]   Combined Morpho-Chemical Profiling of Individual Extracellular Vesicles and Functional Nanoparticles without Labels [J].
Dai, Yichuan ;
Bai, Suwen ;
Hu, Chuanzhen ;
Chu, Kaiqin ;
Shen, Bing ;
Smith, Zachary J. .
ANALYTICAL CHEMISTRY, 2020, 92 (07) :5585-5594
[9]   Refractive index to evaluate staining specificity of extracellular vesicles by flow cytometry [J].
de Rond, L. ;
Libregts, S. F. W. M. ;
Rikkert, L. G. ;
Hau, C. M. ;
van der Pol, E. ;
Nieuwland, R. ;
van Leeuwen, T. G. ;
Coumans, F. A. W. .
JOURNAL OF EXTRACELLULAR VESICLES, 2019, 8 (01)
[10]   Photonic force microscope calibration by thermal noise analysis [J].
Florin, EL ;
Pralle, A ;
Stelzer, EHK ;
Horber, JKH .
APPLIED PHYSICS A-MATERIALS SCIENCE & PROCESSING, 1998, 66 (Suppl 1) :S75-S78