Mechanistic QSAR analysis to predict the binding affinity of diverse heterocycles as selective cannabinoid 2 receptor inhibitor

被引:3
作者
Jawarkar, Rahul D. [1 ,9 ]
Zaki, Magdi E. A. [2 ,10 ]
Al-Hussain, Sami A. [2 ]
Alzahrani, Abdullah Yahya Abdullah [3 ]
Ming, Long Chiau [4 ]
Samad, Abdul [5 ]
Rashid, Summya [6 ]
Mali, Suraj [7 ]
Elossaily, Gehan M. [8 ]
机构
[1] Dr Rajendra Gode Inst Pharm, Dept Med Chem, Univ Mardi Rd, Amravati, India
[2] Imam Mohammad Ibn Saud Islamic Univ, Fac Sci, Dept Chem, Riyadh, Saudi Arabia
[3] King Khalid Univ, Fac Sci & Arts, Dept Chem, Mohail Assir, Saudi Arabia
[4] Sunway Univ, Sch Med & Life Sci, Sunway City, Malaysia
[5] Tishk Int Univ, Fac Pharm, Dept Pharmaceut Chem, Erbil, Iraq
[6] Prince Sattam Bin Abdulaziz Univ, Coll Pharm, Dept Pharmacol & Toxicol, Al Kharj, Saudi Arabia
[7] Birla Inst Technol, Dept Pharmaceut Sci & Technol, Ranchi, India
[8] AlMaarefa Univ, Coll Med, Dept Basic Med Sci, Riyadh, Saudi Arabia
[9] Dr Rajendra Gode Inst Pharm, Dept Med Chem, Univ Mardi Rd, Amravati 444901, India
[10] Imam MohammadIbn Saud Islamic Univ, Fac Sci, Dept Chem, Riyadh 13318, Saudi Arabia
关键词
Cannabinoid; 2; receptor; QSAR; GA-MLR; pharmacophore modeling; Molecular dynamic simulation; MMGBSA; QUANTITATIVE STRUCTURE-ACTIVITY; STRUCTURAL REQUIREMENTS; PYMOL PLUGIN; LIGANDS; SOLUBILITY; DISCOVERY; 3D-QSAR; MODELS; POTENT; CB1;
D O I
10.1080/16583655.2023.2265104
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
CB2R are fascinating targets for neuropathic pain and mood disorders because of their improved biological characteristics. Experimental data on 1296 cannabinoid-2 receptor inhibitors with different structural properties were used to develop a QSAR model following OECD guidelines. This study selected the best-predicted model (80:20 splitting ratio) with fitting parameters, such as R-2:0.78; F:623.6, Internal validation parameters, such as Q(Loo)(2):0.78; CCCcv: 0.87 and external validation parameters, such as R-ext(2):0.77; Q(F1)(2):0.7730; Q(F2)(2):0.7730; Q(F3)(2):0.76; CCCext:0.87. Following this, another QSAR model was developed by using a 50:50 split ratio for thetraining and the prediction sets, which were then swapped to evaluate the robustness of the built QSAR model by the 50:50 ratio, which also gives a deeper understanding of the chemical space. In addition, we have confirmed the QSAR result with pharmacophore modelling, and supported by molecular docking, MD simulation, MMGBSA and ADME studies. Thus, this work may enable cannabinoid 2 receptor inhibsitor development.
引用
收藏
页数:21
相关论文
共 62 条
[41]   Multiple quantitative structure-activity relationships (QSARs) analysis for orally active trypanocidal N-myristoyltransferase inhibitors [J].
Masand, Vijay H. ;
El-Sayed, Nahed N. E. ;
Bambole, Mukesh U. ;
Patil, Vaijant R. ;
Thakur, Sumer D. .
JOURNAL OF MOLECULAR STRUCTURE, 2019, 1175 :481-487
[42]   PyDescriptor: A new PyMOL plugin for calculating thousands of easily understandable molecular descriptors [J].
Masand, Vijay H. ;
Rastija, Vesna .
CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2017, 169 :12-18
[43]   Optimization of antiproliferative activity of substituted phenyl 4-(2-oxoimidazolidin-1-yl) benzenesulfonates: QSAR and CoMFA analyses [J].
Masand, Vijay H. ;
Mahajan, Devidas T. ;
Alafeefy, Ahmed M. ;
Bukhari, Syed Nasir Abbas ;
Elsayed, Nahed N. .
EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2015, 77 :230-237
[44]   Effect of information leakage and method of splitting (rational and random) on external predictive ability and behavior of different statistical parameters of QSAR model [J].
Masand, Vijay H. ;
Mahajan, Devidas T. ;
Nazeruddin, Gulam M. ;
Ben Hadda, Taibi ;
Rastija, Vesna ;
Alfeefy, Ahmed M. .
MEDICINAL CHEMISTRY RESEARCH, 2015, 24 (03) :1241-1264
[45]   Structural requirements for factor xa inhibition by 3-oxybenzamides with neutral P1 substituents:: Combining X-ray crystallography, 3D-QSAR, and tailored scoring functions [J].
Matter, H ;
Will, DW ;
Nazaré, M ;
Schreuder, H ;
Laux, V ;
Wehner, V .
JOURNAL OF MEDICINAL CHEMISTRY, 2005, 48 (09) :3290-3312
[46]   Open Babel: An open chemical toolbox [J].
O'Boyle, Noel M. ;
Banck, Michael ;
James, Craig A. ;
Morley, Chris ;
Vandermeersch, Tim ;
Hutchison, Geoffrey R. .
JOURNAL OF CHEMINFORMATICS, 2011, 3
[47]   Contemporary developments in the discovery of selective factor Xa inhibitors: A review [J].
Patel, Nirav R. ;
Patel, Dushyant V. ;
Murumkar, Prashant R. ;
Yadav, Mange Ram .
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2016, 121 :671-698
[48]   Tricyclic pyrazoles. Part 6. Benzofuro[3,2-c]pyrazole: A versatile architecture for CB2 selective ligands [J].
Pinna, Giovanni ;
Loriga, Giovanni ;
Lazzari, Paolo ;
Ruiu, Stefania ;
Falzoi, Matteo ;
Frau, Simona ;
Pau, Amedeo ;
Murineddu, Gabriele ;
Asproni, Battistina ;
Pinna, Gerard A. .
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2014, 82 :281-292
[49]   Selective Cannabinoid 2 Receptor Agonists as Potential Therapeutic Drugs for the Treatment of Endotoxin-Induced Uveitis [J].
Porter, Richard Frederick ;
Szczesniak, Anna-Maria ;
Toguri, James Thomas ;
Gebremeskel, Simon ;
Johnston, Brent ;
Lehmann, Christian ;
Fingerle, Juergen ;
Rothenhaeusler, Benno ;
Perret, Camille ;
Rogers-Evans, Mark ;
Kimbara, Atsushi ;
Nettekoven, Matthias ;
Guba, Wolfgang ;
Grether, Uwe ;
Ullmer, Christoph ;
Kelly, Melanie E. M. .
MOLECULES, 2019, 24 (18)
[50]   Cannabinoid receptor interactions with the antagonists SR 141716A and SR 144528 [J].
Shire, D ;
Calandra, B ;
Bouaboula, M ;
Barth, F ;
Rinaldi-Carmona, M ;
Casellas, P ;
Ferrara, P .
LIFE SCIENCES, 1999, 65 (6-7) :627-635