Complete genome sequence of Luteolibacter sp. strain LG18, an <sc>L</sc>-glucose-utilizing bacterium isolated from soil

被引：1

作者：

Yachida, Masashi ^{[1
,3
]}

Nakamura, Akira ^{[1
,2
]}

机构：

[1] Univ Tsukuba, Inst Life & Environm Sci, Tsukuba, Japan

[2] Univ Tsukuba, Microbiol Res Ctr Sustainabil MiCS, Tsukuba, Japan

[3] AGC Inc, Tokyo, Tokyo, Japan

来源：

MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 03期

基金：

日本学术振兴会;

关键词：

L-glucose utilization; Luteolibacter sp; complete genome sequence;

D O I：

10.1128/mra.00888-23

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

An L-glucose-utilizing bacterium, Luteolibacter sp. strain LG18, was isolated from soil, and the complete genome sequence was determined. Strain LG18 contained a single circular chromosome of 5.80 Mb with a G + C content of 64.5%, in which 4,598 protein-coding genes, 9 rRNA, and 56 tRNA genes were identified.

引用

页数：3

共 8 条

[1]

Joshi N.A., 2011, A Sliding-Window, Adaptive, Quality-Based Trimming Tool for Fastq Files

[2]

Martin M., 2011, EMBNET J, V17, P10, DOI [DOI 10.14806/EJ.17.1.200, 10.14806/ej.17.1.200]

[3] Paracoccus laeviglucosivorans sp nov., an L-glucose-utilizing bacterium isolated from soil [J].

Nakamura, Akira .

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2015, 65 :3878-3884

[4] CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes [J].

Parks, Donovan H. ;

Imelfort, Michael ;

Skennerton, Connor T. ;

Hugenholtz, Philip ;

Tyson, Gene W. .

GENOME RESEARCH, 2015, 25 (07) :1043-1055

[5] An L-glucose Catabolic Pathway in Paracoccus Species 43P [J].

Shimizu, Tetsu ;

Takaya, Naoki ;

Nakamura, Akira .

JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (48) :40448-40456

[6] DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication [J].

Tanizawa, Yasuhiro ;

Fujisawa, Takatomo ;

Nakamura, Yasukazu .

BIOINFORMATICS, 2018, 34 (06) :1037-1039

[7] Completing bacterial genome assemblies with multiplex MinION sequencing [J].

Wick, Ryan R. ;

Judd, Louise M. ;

Gorrie, Claire L. ;

Holt, Kathryn E. .

MICROBIAL GENOMICS, 2017, 3 (10)

[8] Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads [J].

Wick, Ryan R. ;

Judd, Louise M. ;

Gorrie, Claire L. ;

Holt, Kathryn E. .

PLOS COMPUTATIONAL BIOLOGY, 2017, 13 (06)

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