Omics-based molecular classifications empowering in precision oncology

被引:10
作者
Zhou, Zhaokai [1 ,2 ]
Lin, Ting [1 ]
Chen, Shuang [3 ]
Zhang, Ge [4 ]
Xu, Yudi [5 ]
Zou, Haijiao [3 ]
Zhou, Aoyang [1 ]
Zhang, Yuyuan [1 ]
Weng, Siyuan [1 ]
Han, Xinwei [1 ,6 ,7 ]
Liu, Zaoqu [1 ,6 ,7 ,8 ]
机构
[1] Zhengzhou Univ, Dept Intervent Radiol, Affiliated Hosp 1, Zhengzhou 450052, Henan, Peoples R China
[2] Zhengzhou Univ, Dept Urol, Affiliated Hosp 1, Zhengzhou 450052, Henan, Peoples R China
[3] Zhengzhou Univ, Ctr Reprod Med, Affiliated Hosp 1, Zhengzhou 450052, Henan, Peoples R China
[4] Zhengzhou Univ, Dept Cardiol, Affiliated Hosp 1, Zhengzhou, Peoples R China
[5] Zhengzhou Univ, Dept Neurol, Affiliated Hosp 1, Zhengzhou 450052, Henan, Peoples R China
[6] Zhengzhou Univ, Intervent Inst, Zhengzhou 450052, Henan, Peoples R China
[7] Intervent Treatment & Clin Res Ctr Henan Prov, Zhengzhou 450052, Henan, Peoples R China
[8] Chinese Acad Med Sci & Peking Union Med Coll, Inst Basic Med Sci, Beijing 100730, Peoples R China
关键词
Omics biomarkers; Molecular classification; Precision oncology; Clinical translation; SOCS3;
D O I
10.1007/s13402-023-00912-8
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
BackgroundIn the past decades, cancer enigmatical heterogeneity at distinct expression levels could interpret disparities in therapeutic response and prognosis. It built hindrances to precision medicine, a tactic to tailor customized treatment informed by the tumors' molecular profile. Single-omics analysis dissected the biological features associated with carcinogenesis to some extent but still failed to revolutionize cancer treatment as expected. Integrated omics analysis incorporated tumor biological networks from diverse layers and deciphered a holistic overview of cancer behaviors, yielding precise molecular classification to facilitate the evolution and refinement of precision medicine.ConclusionThis review outlined the biomarkers at multiple expression layers to tutor molecular classification and pinpoint tumor diagnosis, and explored the paradigm shift in precision therapy: from single- to multi-omics-based subtyping to optimize therapeutic regimens. Ultimately, we firmly believe that by parsing molecular characteristics, omics-based typing will be a powerful assistant for precision oncology.
引用
收藏
页码:759 / 777
页数:19
相关论文
共 173 条
[1]   Epithelial-to-Mesenchymal Transition is a Cause of Both Intrinsic and Acquired Resistance to KRAS G12C Inhibitor in KRAS G12C-Mutant Non-Small Cell Lung Cancer [J].
Adachi, Yuta ;
Ito, Kentaro ;
Hayashi, Yuko ;
Kimura, Ryo ;
Tan, Tuan Zea ;
Yamaguchi, Rui ;
Ebi, Hiromichi .
CLINICAL CANCER RESEARCH, 2020, 26 (22) :5962-5973
[2]   From Tissue-Agnostic to N-of-One Therapies:(R)Evolution of the Precision Paradigm [J].
Adashek, Jacob J. ;
Subbiah, Vivek ;
Kurzrock, Razelle .
TRENDS IN CANCER, 2021, 7 (01) :15-28
[3]   Transcriptomic silencing as a potential mechanism of treatment resistance [J].
Adashek, Jacob J. ;
Kato, Shumei ;
Parulkar, Rahul ;
Szeto, Christopher W. ;
Sanborn, J. Zachary ;
Vaske, Charles J. ;
Benz, Stephen C. ;
Reddy, Sandeep K. ;
Kurzrock, Razelle .
JCI INSIGHT, 2020, 5 (11)
[4]   Luminal B Breast Cancer: Molecular Characterization, Clinical Management, and Future Perspectives [J].
Ades, Felipe ;
Zardavas, Dimitrios ;
Bozovic-Spasojevic, Ivana ;
Pugliano, Lina ;
Fumagalli, Debora ;
de Azambuja, Evandro ;
Viale, Giuseppe ;
Sotiriou, Christos ;
Piccart, Martine .
JOURNAL OF CLINICAL ONCOLOGY, 2014, 32 (25) :2794-+
[5]   Pertuzumab Plus Trastuzumab in Patients With Endometrial Cancer With ERBB2/3 Amplification, Overexpression, or Mutation: Results From the TAPUR Study [J].
Ahn, Eugene R. ;
Rothe, Michael ;
Mangat, Pam K. ;
Garrett-Mayer, Elizabeth ;
Ali-Ahmad, Hussein M. ;
Chan, John ;
Maitland, Michael L. ;
Patel, Sapna R. ;
Reese, Zachary ;
Balmanoukian, Ani S. ;
Drescher, Charles W. ;
Li, Rui ;
Tsimberidou, Apostolia M. ;
Leath, Charles A., III ;
O'Lone, Raegan ;
Grantham, Gina N. ;
Halabi, Susan ;
Schilsky, Richard L. .
JCO PRECISION ONCOLOGY, 2023, 7
[6]   Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma [J].
Ally, Adrian ;
Balasundaram, Miruna ;
Carlsen, Rebecca ;
Chuah, Eric ;
Clarke, Amanda ;
Dhalla, Noreen ;
Holt, Robert A. ;
Jones, Steven J. M. ;
Lee, Darlene ;
Ma, Yussanne ;
Marra, Marco A. ;
Mayo, Michael ;
Moore, Richard A. ;
Mungall, Andrew J. ;
Schein, Jacqueline E. ;
Sipahimalani, Payal ;
Tam, Angela ;
Thiessen, Nina ;
Cheung, Dorothy ;
Wong, Tina ;
Brooks, Denise ;
Robertson, A. Gordon ;
Bowlby, Reanne ;
Mungall, Karen ;
Sadeghi, Sara ;
Xi, Liu ;
Covington, Kyle ;
Shinbrot, Eve ;
Wheeler, David A. ;
Gibbs, Richard A. ;
Donehower, Lawrence A. ;
Wang, Linghua ;
Bowen, Jay ;
Gastier-Foster, Julie M. ;
Gerken, Mark ;
Helsel, Carmen ;
Leraas, Kristen M. ;
Lichtenberg, Tara M. ;
Ramirez, Nilsa C. ;
Wise, Lisa ;
Zmuda, Erik ;
Gabriel, Stacey B. ;
Meyerson, Matthew ;
Cibulskis, Carrie ;
Murray, Bradley A. ;
Shih, Juliann ;
Beroukhim, Rameen ;
Cherniack, Andrew D. ;
Schumacher, Steven E. ;
Saksena, Gordon .
CELL, 2017, 169 (07) :1327-+
[7]   Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy [J].
Angelova, Mihaela ;
Charoentong, Pornpimol ;
Hackl, Hubert ;
Fischer, Maria L. ;
Snajder, Rene ;
Krogsdam, Anne M. ;
Waldner, Maximilian J. ;
Bindea, Gabriela ;
Mlecnik, Bernhard ;
Galon, Jerome ;
Trajanoski, Zlatko .
GENOME BIOLOGY, 2015, 16
[8]   Clinical activity of durvalumab for patients with advanced mismatch repair-deficient and repair-proficient endometrial cancer. A nonrandomized phase 2 clinical trial [J].
Antill, Yoland ;
Kok, Peey-Sei ;
Robledo, Kristy ;
Yip, Sonia ;
Cummins, Michelle ;
Smith, Deborah ;
Spurdle, Amanda ;
Barnes, Elizabeth ;
Lee, Yeh Chen ;
Friedlander, Michael ;
Baron-Hay, Sally ;
Shannon, Catherine ;
Coward, Jermaine ;
Beale, Philip ;
Goss, Geraldine ;
Meniawy, Tarek ;
Lombard, Janine ;
Andrews, John ;
Stockler, Martin R. ;
Mileshkin, Linda .
JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2021, 9 (06)
[9]   Nivolumab Is Effective in Mismatch Repair-Deficient Noncolorectal Cancers: Results From Arm Z1D-A Subprotocol of the NCI-MATCH (EAY131) Study [J].
Azad, Nilofer S. ;
Gray, Robert J. ;
Overman, Michael J. ;
Schoenfeld, Jonathan D. ;
Mitchell, Edith P. ;
Zwiebel, James A. ;
Sharon, Elad ;
Streicher, Howard ;
Li, Shuli ;
McShane, Lisa M. ;
Rubinstein, Larry ;
Patton, David R. ;
Williams, P. Mickey ;
Coffey, Brent ;
Hamilton, Stanley R. ;
Bahary, Nathan ;
Suga, J. Marie ;
Hatoum, Hassan ;
Abrams, Jeffrey S. ;
Conley, Barbara A. ;
Arteaga, Carlos L. ;
Harris, Lyndsay ;
O'Dwyer, Peter J. ;
Chen, Alice P. ;
Flaherty, Keith T. .
JOURNAL OF CLINICAL ONCOLOGY, 2020, 38 (03) :214-+
[10]   Hypomethylation of the IGF2 DMR in Colorectal Tumors, Detected by Bisulfite Pyrosequencing, Is Associated With Poor Prognosis [J].
Baba, Yoshifumi ;
Nosho, Katsuhiko ;
Shima, Kaori ;
Huttenhower, Curtis ;
Tanaka, Noriko ;
Hazra, Aditi ;
Giovannucci, Edward L. ;
Fuchs, Charles S. ;
Ogino, Shuji .
GASTROENTEROLOGY, 2010, 139 (06) :1855-1864