Transcriptomic analysis identifies CYP27A1 as a diagnostic marker for the prognosis and immunity in lung adenocarcinoma

被引:6
作者
Yin, Yi [1 ]
He, Muqun [1 ]
Huang, Yunjian [1 ]
Xie, Xianhe [2 ]
机构
[1] Fujian Med Univ, Fujian Canc Hosp, Clin Oncol Sch, Dept Med Oncol, Fuzhou 350014, Peoples R China
[2] Fujian Med Univ, Affiliated Hosp 1, Mol Oncol Res Inst, Dept Oncol,Fujian Key Lab Precis Med Canc, Fuzhou 350005, Peoples R China
关键词
Immune infiltrates; TCGA; Lipid metabolism; Lung cancer; Prognosis; FATTY-ACID SYNTHASE; LIPID-METABOLISM; CHOLESTEROL-METABOLISM; CANCER; CELLS; EXPRESSION; SURVIVAL;
D O I
10.1186/s12865-023-00572-1
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
BackgroundThe association between lipid metabolism disorder and carcinogenesis is well-established, but there is limited research on the connection between lipid metabolism-related genes (LRGs) and lung adenocarcinoma (LUAD). The objective of our research was to identify LRGs as the potential biomarkers for prognosis and assess their impact on immune cell infiltration in LUAD.MethodsWe identified novel prognostic LRGs for LUAD patients via the bioinformatics analysis. CYP27A1 expression level was systematically evaluated via various databases, such as TCGA, UALCAN, and TIMER. Subsequently, LinkedOmics was utilized to perform the CYP27A1 co-expression network and GSEA. ssGSEA was conducted to assess the association between infiltration of immune cells and CYP27A1 expression. CYP27A1's expression level was validated by qRT-PCR analysis.ResultsCYP27A1 expression was decreased in LUAD. Reduced CYP27A1 expression was linked to unfavorable prognosis in LUAD. Univariate and multivariate analyses indicated that CYP27A1 was an independent prognostic biomarker for LUAD patients. GSEA results revealed a positive correlation between CYP27A1 expression and immune-related pathways. Furthermore, CYP27A1 expression was positively correlated with the infiltration levels of most immune cells.ConclusionCYP27A1 is a potential biomarker for LUAD patients, and our findings provided a novel perspective to develop the prognostic marker for LUAD patients.
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页数:16
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共 46 条
[1]   Fatty acid synthase, Her2/neu, and E2F1 as prognostic markers of progression in non-muscle invasive bladder cancer [J].
Abdelrahman, Aziza E. ;
Rashed, Hayam E. ;
Elkady, Ehab ;
Elsebai, Eman A. ;
El-Azony, Ahmed ;
Matar, Ihab .
ANNALS OF DIAGNOSTIC PATHOLOGY, 2019, 39 :42-52
[2]   CYP27A1 Loss Dysregulates Cholesterol Homeostasis in Prostate Cancer [J].
Alfaqih, Mahmoud A. ;
Nelson, Erik R. ;
Liu, Wen ;
Safi, Rachid ;
Jasper, Jeffery S. ;
Macias, Everardo ;
Geradts, Joseph ;
Thompson, J. Will ;
Dubois, Laura G. ;
Freeman, Michael R. ;
Chang, Ching-yi ;
Chi, Jen-Tsan ;
McDonnell, Donald P. ;
Freedland, Stephen J. .
CANCER RESEARCH, 2017, 77 (07) :1662-1673
[3]   Metabolic pathways promoting cancer cell survival and growth [J].
Boroughs, Lindsey K. ;
DeBerardinis, Ralph J. .
NATURE CELL BIOLOGY, 2015, 17 (04) :351-359
[4]   Phase I Study of Single-Agent Anti-Programmed Death-1 (MDX-1106) in Refractory Solid Tumors: Safety, Clinical Activity, Pharmacodynamics, and Immunologic Correlates [J].
Brahmer, Julie R. ;
Drake, Charles G. ;
Wollner, Ira ;
Powderly, John D. ;
Picus, Joel ;
Sharfman, William H. ;
Stankevich, Elizabeth ;
Pons, Alice ;
Salay, Theresa M. ;
McMiller, Tracee L. ;
Gilson, Marta M. ;
Wang, Changyu ;
Selby, Mark ;
Taube, Janis M. ;
Anders, Robert ;
Chen, Lieping ;
Korman, Alan J. ;
Pardoll, Drew M. ;
Lowy, Israel ;
Topalian, Suzanne L. .
JOURNAL OF CLINICAL ONCOLOGY, 2010, 28 (19) :3167-3175
[5]   UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses [J].
Chandrashekar, Darshan S. ;
Bashel, Bhuwan ;
Balasubramanya, Sai Akshaya Hodigere ;
Creighton, Chad J. ;
Ponce-Rodriguez, Israel ;
Chakravarthi, Balabhadrapatruni V. S. K. ;
Varambally, Sooryanarayana .
NEOPLASIA, 2017, 19 (08) :649-658
[6]   Fatty acid oxidation inhibitor etomoxir suppresses tumor progression and induces cell cycle arrest via PPARγ-mediated pathway in bladder cancer [J].
Cheng, Songtao ;
Wang, Gang ;
Wang, Yejinpeng ;
Cai, Liwei ;
Qin, Kaiyu ;
Ju, Lingao ;
Liu, Xuefeng ;
Xiao, Yu ;
Wang, Xinghuan .
CLINICAL SCIENCE, 2019, 133 (15) :1745-1758
[7]   Cellular Fatty Acid Metabolism and Cancer [J].
Currie, Erin ;
Schulze, Almut ;
Zechner, Rudolf ;
Walther, Tobias C. ;
Farese, Robert V., Jr. .
CELL METABOLISM, 2013, 18 (02) :153-161
[8]   Cell death-based treatment of lung adenocarcinoma [J].
Denisenko, Tatiana V. ;
Budkevich, Inna N. ;
Zhivotovsky, Boris .
CELL DEATH & DISEASE, 2018, 9
[9]   Omega-3 fatty acids for breast cancer prevention and survivorship [J].
Fabian, Carol J. ;
Kimler, Bruce F. ;
Hursting, Stephen D. .
BREAST CANCER RESEARCH, 2015, 17
[10]   Cancer Cachexia: Mediators, Signaling, and Metabolic Pathways [J].
Fearon, Kenneth C. H. ;
Glass, David J. ;
Guttridge, Denis C. .
CELL METABOLISM, 2012, 16 (02) :153-166