Nitriles: an attractive approach to the development of covalent inhibitors

被引:37
作者
Bonatto, Vinicius [1 ]
Lameiro, Rafael F. [1 ]
Rocho, Fernanda R. [1 ]
Lameira, Jeronimo [1 ,2 ]
Leitao, Andrei [1 ]
Montanari, Carlos A. [1 ]
机构
[1] Univ Sao Paulo, Sao Carlos Inst Chem, Med & Biol Chem Grp, Ave Trabalhador Sancarlense 400, BR-13566590 Sao Carlos, SP, Brazil
[2] Fed Univ Para, Inst Biol Sci, Rua Augusto Correa S-N, Belem, PA, Brazil
来源
RSC MEDICINAL CHEMISTRY | 2023年 / 14卷 / 02期
基金
瑞典研究理事会; 巴西圣保罗研究基金会;
关键词
BRUTONS TYROSINE KINASE; DIPEPTIDYL-PEPTIDASE-IV; CATHEPSIN-B; CYSTEINE PROTEASES; HIGHLY POTENT; INTRINSIC REACTIVITY; RESIDENCE TIME; BINDING MODE; DESIGN; DISCOVERY;
D O I
10.1039/d2md00204c
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nitriles have broad applications in medicinal chemistry, with more than 60 small molecule drugs on the market containing the cyano functional group. In addition to the well-known noncovalent interactions that nitriles can perform with macromolecular targets, they are also known to improve drug candidates' pharmacokinetic profiles. Moreover, the cyano group can be used as an electrophilic warhead to covalently bind an inhibitor to a target of interest, forming a covalent adduct, a strategy that can present benefits over noncovalent inhibitors. This approach has gained much notoriety in recent years, mainly with diabetes and COVID-19-approved drugs. Nevertheless, the application of nitriles in covalent ligands is not restricted to it being the reactive center, as it can also be employed to convert irreversible inhibitors into reversible ones, a promising strategy for kinase inhibition and protein degradation. In this review, we introduce and discuss the roles of the cyano group in covalent inhibitors, how to tune its reactivity and the possibility of achieving selectivity only by replacing the warhead. Finally, we provide an overview of nitrile-based covalent compounds in approved drugs and inhibitors recently described in the literature.
引用
收藏
页码:201 / 217
页数:18
相关论文
共 126 条
  • [81] REVERSIBLE COVALENT INHIBITION OF PAPAIN BY A PEPTIDE NITRILE - C-13 NMR EVIDENCE FOR A THIOIMIDATE ESTER ADDUCT
    MOON, JB
    COLEMAN, RS
    HANZLIK, RP
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1986, 108 (06) : 1350 - 1351
  • [82] Microglial cathepsin B as a key driver of inflammatory brain diseases and brain aging
    Nakanishi, Hiroshi
    [J]. NEURAL REGENERATION RESEARCH, 2020, 15 (01) : 25 - 29
  • [83] Insights into SARS-CoV-2 genome, structure, evolution, pathogenesis and therapies: Structural genomics approach
    Naqvi, Ahmad Abu Turab
    Fatima, Kisa
    Mohammad, Taj
    Fatima, Urooj
    Singh, Indrakant K.
    Singh, Archana
    Atif, Shaikh Muhammad
    Hariprasad, Gururao
    Hasan, Gulam Mustafa
    Hassan, Md Imtaiyaz
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, 2020, 1866 (10):
  • [84] Peptidomimetic nitrile inhibitors of malarial protease falcipain-2 with high selectivity against human cathepsins
    Nizi, Emanuela
    Sferrazza, Alessio
    Fabbrini, Danilo
    Nardi, Valentina
    Andreini, Matteo
    Graziani, Rita
    Gennari, Nadia
    Bresciani, Alberto
    Paonessa, Giacomo
    Harper, Steven
    [J]. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2018, 28 (09) : 1540 - 1544
  • [85] Exploring the Catalytic Reaction of Cysteine Proteases
    Oanca, Gabriel
    Asadi, Mojgan
    Saha, Arjun
    Ramachandran, Balajee
    Warshel, Arieh
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2020, 124 (50) : 11349 - 11356
  • [86] A generally applicable method for assessing the electrophilicity and reactivity of diverse nitrile-containing compounds
    Oballa, Renata M.
    Truchon, Jean-Francois
    Bayly, Christopher I.
    Chauret, Nathalie
    Day, Stephen
    Crane, Sheldon
    Berthelette, Carl
    [J]. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2007, 17 (04) : 998 - 1002
  • [87] Tetraoxane-Pyrimidine Nitrile Hybrids as Dual Stage Antimalarials
    Oliveira, Rudi
    Guedes, Rita C.
    Meireles, Patricia
    Albuquerque, Ines S.
    Goncalves, Lidia M.
    Pires, Elisabete
    Bronze, Maria Rosario
    Gut, Jiri
    Rosenthal, Philip J.
    Prudencio, Miguel
    Moreira, Rui
    O'Neil, Paul M.
    Lopes, Francisca
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2014, 57 (11) : 4916 - 4923
  • [88] Cysteine proteases and their inhibitors
    Otto, HH
    Schirmeister, T
    [J]. CHEMICAL REVIEWS, 1997, 97 (01) : 133 - 171
  • [89] Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV
    Ou, Xiuyuan
    Liu, Yan
    Lei, Xiaobo
    Li, Pei
    Mi, Dan
    Ren, Lili
    Guo, Li
    Guo, Ruixuan
    Chen, Ting
    Hu, Jiaxin
    Xiang, Zichun
    Mu, Zhixia
    Chen, Xing
    Chen, Jieyong
    Hu, Keping
    Jin, Qi
    Wang, Jianwei
    Qian, Zhaohui
    [J]. NATURE COMMUNICATIONS, 2020, 11 (01)
  • [90] An oral SARS-CoV-2 Mpro inhibitor clinical candidate for the treatment of COVID-19
    Owen, Dafydd R.
    Allerton, Charlotte M. N.
    Anderson, Annaliesa S.
    Aschenbrenner, Lisa
    Avery, Melissa
    Berritt, Simon
    Boras, Britton
    Cardin, Rhonda D.
    Carlo, Anthony
    Coffman, Karen J.
    Dantonio, Alyssa
    Di, Li
    Eng, Heather
    Ferre, RoseAnn
    Gajiwala, Ketan S.
    Gibson, Scott A.
    Greasley, Samantha E.
    Hurst, Brett L.
    Kadar, Eugene P.
    Kalgutkar, Amit S.
    Lee, Jack C.
    Lee, Jisun
    Liu, Wei
    Mason, Stephen W.
    Noell, Stephen
    Novak, Jonathan J.
    Obach, R. Scott
    Ogilvie, Kevin
    Patel, Nandini C.
    Pettersson, Martin
    Rai, Devendra K.
    Reese, Matthew R.
    Sammons, Matthew F.
    Sathish, Jean G.
    Singh, Ravi Shankar P.
    Steppan, Claire M.
    Stewart, Al E.
    Tuttle, Jamison B.
    Updyke, Lawrence
    Verhoest, Patrick R.
    Wei, Liuqing
    Yang, Qingyi
    Zhu, Yuao
    [J]. SCIENCE, 2021, 374 (6575) : 1586 - +