Comparative Analysis of Microsatellite and SNP Markers for Genetic Management of Red Deer
被引:10
作者:
Perez-Gonzalez, Javier
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机构:
Univ Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, SpainUniv Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
Perez-Gonzalez, Javier
[1
]
Carranza, Juan
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机构:
Univ Cordoba, Wildlife Res Unit UIRCP, Cordoba 14071, SpainUniv Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
Carranza, Juan
[2
]
Anaya, Gabriel
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机构:
Univ Cordoba, Wildlife Res Unit UIRCP, Cordoba 14071, Spain
Univ Cordoba, Dept Genet, Cordoba 14071, SpainUniv Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
Anaya, Gabriel
[2
,3
]
Broggini, Camilla
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机构:
Univ Cordoba, Wildlife Res Unit UIRCP, Cordoba 14071, SpainUniv Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
Broggini, Camilla
[2
]
Vedel, Giovanni
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机构:
Univ Cordoba, Wildlife Res Unit UIRCP, Cordoba 14071, SpainUniv Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
Vedel, Giovanni
[2
]
de la Pena, Eva
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机构:
Univ Cordoba, Wildlife Res Unit UIRCP, Cordoba 14071, Spain
Inst Game & Wildlife Res IREC, Ciudad Real 13005, SpainUniv Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
de la Pena, Eva
[2
,4
]
Membrillo, Alberto
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机构:
Univ Cordoba, Wildlife Res Unit UIRCP, Cordoba 14071, Spain
Univ Cordoba, Fac Educ Sci, Dept Specif Didact, Cordoba 14071, SpainUniv Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
Membrillo, Alberto
[2
,5
]
机构:
[1] Univ Extremadura, Vet Fac, Biol & Ethol Unit, Caceres 10003, Spain
[2] Univ Cordoba, Wildlife Res Unit UIRCP, Cordoba 14071, Spain
The analysis of population genetic structure and individual multilocus heterozygosity are crucial for wildlife management and conservation. Microsatellite markers have traditionally been used to assess these genetic parameters. However, single-nucleotide polymorphisms (SNPs) are becoming increasingly popular. Our goal here was to determine to what extent SNPs can provide better insights than microsatellites into the overall genetic status and population genetic processes in the species. To this end, we genotyped 210 red deer (Cervus elaphus) in the Spanish wild population with both 11 microsatellites and 31,712 SNPs. We compared parameters related to population genetic structure and individual multilocus heterozygosity obtained with both types of markers. Our results showed correlations between parameters measured using both microsatellites and SNPs, particularly those related to the level of genetic diversity and genetic differentiation. However, we found notably lower precision of microsatellites in measuring the distribution of genetic diversity among individuals. We conclude that microsatellites can be used to monitor the overall genetic status and detect broad patterns in red deer populations. Nevertheless, the greater precision of SNPs in inferring genetic structure and multilocus heterozygosity leads us to encourage scientists and wildlife managers to prioritize their use whenever possible.
机构:
SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Univ Porto, Ctr Invest Biodiversidade & Recursos Genet CIBIO, InBio Lab Associado, P-4485661 Vairao, Portugal
Univ Porto, Dept Biol, Fac Ciencias, P-4099002 Oporto, PortugalSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Queiros, Joao
Vicente, Joaquin
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机构:
SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, SpainSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Vicente, Joaquin
Boadella, Mariana
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SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, SpainSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Boadella, Mariana
Gortazar, Christian
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SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, SpainSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Gortazar, Christian
Alves, Paulo Celio
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机构:
Univ Porto, Ctr Invest Biodiversidade & Recursos Genet CIBIO, InBio Lab Associado, P-4485661 Vairao, Portugal
Univ Porto, Dept Biol, Fac Ciencias, P-4099002 Oporto, Portugal
Univ Montana, Wildlife Biol Program, Missoula, MT 59812 USASaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
机构:
Univ Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Giovannelli, Francesca
Mori, Emiliano
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机构:
IRET CNR, Inst Terr Ecosyst, Via Madonna Piano 10, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Mori, Emiliano
Zaccaroni, Marco
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机构:
Univ Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Zaccaroni, Marco
Dessi-Fulgheri, Francesco
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机构:
Univ Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Dessi-Fulgheri, Francesco
Baratti, Mariella
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机构:
IBBR CNR, Inst Biosci & Bioresources, Via Madonna Piano 10, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
机构:
SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Univ Porto, Ctr Invest Biodiversidade & Recursos Genet CIBIO, InBio Lab Associado, P-4485661 Vairao, Portugal
Univ Porto, Dept Biol, Fac Ciencias, P-4099002 Oporto, PortugalSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Queiros, Joao
Vicente, Joaquin
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h-index: 0
机构:
SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, SpainSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Vicente, Joaquin
Boadella, Mariana
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h-index: 0
机构:
SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, SpainSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Boadella, Mariana
Gortazar, Christian
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h-index: 0
机构:
SaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, SpainSaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
Gortazar, Christian
Alves, Paulo Celio
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h-index: 0
机构:
Univ Porto, Ctr Invest Biodiversidade & Recursos Genet CIBIO, InBio Lab Associado, P-4485661 Vairao, Portugal
Univ Porto, Dept Biol, Fac Ciencias, P-4099002 Oporto, Portugal
Univ Montana, Wildlife Biol Program, Missoula, MT 59812 USASaBio IREC CSIC UCLM JCCM, Ronda Toledo s n, Ciudad Real 13071, Spain
机构:
Univ Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Giovannelli, Francesca
Mori, Emiliano
论文数: 0引用数: 0
h-index: 0
机构:
IRET CNR, Inst Terr Ecosyst, Via Madonna Piano 10, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Mori, Emiliano
Zaccaroni, Marco
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h-index: 0
机构:
Univ Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Zaccaroni, Marco
Dessi-Fulgheri, Francesco
论文数: 0引用数: 0
h-index: 0
机构:
Univ Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy
Dessi-Fulgheri, Francesco
Baratti, Mariella
论文数: 0引用数: 0
h-index: 0
机构:
IBBR CNR, Inst Biosci & Bioresources, Via Madonna Piano 10, I-50019 Sesto Fiorentino, FI, ItalyUniv Florence, Dept Anim Biol, Via Madonna Piano 6, I-50019 Sesto Fiorentino, FI, Italy