Investigation of the molecular mechanism and diastereoselectivity in the [3+2] cycloaddition reaction between acetonitrile oxide and Cis-3,4-Dichlorocyclobutene: Insights from MEDT and docking study

被引:7
作者
Aitouna, Abdelhak Ouled [1 ]
Mohammad-Salim, Haydar [2 ,3 ]
Zeroual, Abdellah [1 ]
Syed, Asad [4 ]
Bahkali, Ali H. [4 ]
de Julian-Ortiz, Jesus Vicente
机构
[1] Chouaib Doukkali Univ, Fac Sci, Mol Modelling & Spect Res Team, POB 20, El Jadida 24000, Morocco
[2] Univ Zakho, Fac Sci, Dept Chem, Duhok 42001, Kurdistan Regio, Iraq
[3] Univ Valencia, Pharm Fac, Dept Phys Chem, Mol Topol & Drug Design Res Unit, Valencia 46100, Spain
[4] King Saud Univ, Dept Bot & Microbiol, Coll Sci, POB 2455, Riyadh 11451, Saudi Arabia
关键词
3+2] cycloaddition; MEDT; BET; Docking study; SARS-CoV2; Ribavirin; ELECTRON-DENSITY THEORY; 1,3-DIPOLAR CYCLOADDITION; IMPLEMENTATION; LOCALIZATION; OPTIMIZATION; MODEL;
D O I
10.1016/j.comptc.2023.114283
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
[3 + 2] cycloaddition (32CA) reactions involving acetonitrile oxide 1 and cis-3,4-dichlorocyclobutene 2 has been investigated via Molecular Electron Density Theory (MEDT) at B3LYP and M06-2X associated with the basis 6-311++G(d,p). The calculated energy profile demonstrates clearly that this reaction is considerably high diastereoselectivity, which is perfectly in accordance with the results of the experiments. The cycloaddition reaction's molecular mechanism has been examined in bonding evolution theory (BET) terms that displays several changes in electron densities along the reaction pathway and demonstrates a one-step process with highly asynchronous transition states. The acetonitrile oxide under study was classified as zwitter-ionic species from the topological analysis of the electron localization function (ELF). In addition, the optimum solvent for performing this cycloaddition is cyclohexane, which is followed by ether and then chloroform. In a further step, a docking survey was carried out for cycloadducts 3, 3-F, 4 and 4-F docked to the main protease of SARS-CoV2 (6LU7) in comparison with ribavirin, revealing that these cycloadducts have lower binding energies than ribavirin.
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页数:9
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