DELTA50: A Highly Accurate Database of Experimental 1H and 13C NMR Chemical Shifts Applied to DFT Benchmarking

被引:20
作者
Cohen, Ryan D. D. [1 ,2 ]
Wood, Jared S. S. [1 ,3 ]
Lam, Yu-Hong [4 ]
Buevich, Alexei V. V. [1 ]
Sherer, Edward C. C. [1 ]
Reibarkh, Mikhail [1 ]
Williamson, R. Thomas [3 ]
Martin, Gary E. E. [2 ]
机构
[1] Merck & Co Inc, Analyt Res & Dev, Rahway, NJ 07065 USA
[2] Seton Hall Univ, Dept Chem & Biochem, S Orange, NJ 07079 USA
[3] Univ North Carolina Wilmington, Dept Chem & Biochem, Wilmington, NC 28409 USA
[4] Merck & Co Inc, Dept Computat & Struct Chem, Rahway, NJ 07065 USA
关键词
NMR; DFT; chemical shift predictions; benchmark; computational chemistry; DENSITY-FUNCTIONAL THEORY; GENERALIZED GRADIENT APPROXIMATION; MOLECULAR-ORBITAL METHODS; GAUSSIAN-BASIS SETS; VALENCE BASIS-SETS; MAIN-GROUP THERMOCHEMISTRY; COMPLEX ORGANIC-MOLECULES; TRIPLE ZETA VALENCE; STRUCTURE ELUCIDATION; CORRELATION-ENERGY;
D O I
10.3390/molecules28062449
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Density functional theory (DFT) benchmark studies of H-1 and C-13 NMR chemical shifts often yield differing conclusions, likely due to non-optimal test molecules and non-standardized data acquisition. To address this issue, we carefully selected and measured H-1 and C-13 NMR chemical shifts for 50 structurally diverse small organic molecules containing atoms from only the first two rows of the periodic table. Our NMR dataset, DELTA50, was used to calculate linear scaling factors and to evaluate the accuracy of 73 density functionals, 40 basis sets, 3 solvent models, and 3 gauge-referencing schemes. The best performing DFT methodologies for H-1 and C-13 NMR chemical shift predictions were WP04/6-311++G(2d,p) and omega B97X-D/def2-SVP, respectively, when combined with the polarizable continuum solvent model (PCM) and gauge-independent atomic orbital (GIAO) method. Geometries should be optimized at the B3LYP-D3/6-311G(d,p) level including the PCM solvent model for the best accuracy. Predictions of 20 organic compounds and natural products from a separate probe set had root-mean-square deviations (RMSD) of 0.07 to 0.19 for H-1 and 0.5 to 2.9 for C-13. Maximum deviations were less than 0.5 and 6.5 ppm for H-1 and C-13, respectively.
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页数:28
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