Metal-Assisted Complexation of Fluorogenic Dyes by Cucurbit[7]uril and Cucurbit[8]uril: A DFT Evaluation of the Key Factors Governing the Host-Guest Recognition

被引:7
作者
Kircheva, Nikoleta [1 ]
Dobrev, Stefan [1 ]
Dasheva, Lyubima [2 ]
Nikolova, Valya [2 ]
Angelova, Silvia [1 ]
Dudev, Todor [2 ]
机构
[1] Bulgarian Acad Sci, Inst Opt Mat & Technol Acad J Malinowski, Sofia 1113, Bulgaria
[2] Sofia Univ St Kliment Ohridski, Fac Chem & Pharm, Sofia 1164, Bulgaria
来源
MOLECULES | 2023年 / 28卷 / 04期
关键词
cucurbituril; thiazole orange; neutral red; thioflavin T; complexation; THIOFLAVIN-T; NEUTRAL RED; PHOTOPHYSICAL PROPERTIES; CUCURBITURIL HOMOLOGS; DFT/SMD EVALUATION; FLUORESCENT DYES; THIAZOLE ORANGE; CATIONS; BINDING; CYCLODEXTRIN;
D O I
10.3390/molecules28041540
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
With the emergence of host-guest systems, a novel branch of complexation chemistry has found wide application in industries such as food, pharmacy, medicine, environmental protection and cosmetics. Along with the extensively studied cyclodextrins and calixarenes, the innovative cucurbiturils (CB) have enjoyed increased popularity among the scientific community as they possess even better qualities as cavitands as compared to the former molecules. Moreover, their complexation abilities could further be enhanced with the assistance of metal cations, which can interestingly exert a dual effect on the complexation process: either by competitively binding to the host entity or cooperatively associating with the CB@guest structures. In our previous work, two metal species (Mg2+ and Ga3+) have been found to bind to CB molecules in the strongest fashion upon the formation of host-guest complexes. The current study focuses on their role in the complex formation with three dye molecules: thiazole orange, neutral red, and thioflavin T. Various key factors influencing the process have been recognized, such as pH and the dielectric constant of the medium, the cavity size of the host, Mn+ charge, and the presence/absence of hydration shell around the metal cation. A well-calibrated DFT methodology, solidly based and validated and presented in the literature experimental data, is applied. The obtained results shed new light on several aspects of the cucurbituril complexation chemistry.
引用
收藏
页数:15
相关论文
共 64 条
  • [1] Factors Governing the Host-Guest Interactions between IIA/IIB Group Metal Cations and α-Cyclodextrin: A DFT/CDM Study
    Angelova, Silvia
    Nikolova, Valia
    Molla, Nevse
    Dudev, Todor
    [J]. INORGANIC CHEMISTRY, 2017, 56 (04) : 1981 - 1987
  • [2] Cucurbiturils: from synthesis to high-affinity binding and catalysis
    Assaf, Khaleel I.
    Nau, Werner M.
    [J]. CHEMICAL SOCIETY REVIEWS, 2015, 44 (02) : 394 - 418
  • [3] Direct observation of amyloid fibril growth monitored by thioflavin T fluorescence
    Ban, T
    Hamada, D
    Hasegawa, K
    Naiki, H
    Goto, Y
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (19) : 16462 - 16465
  • [4] Cucurbit[n]urils (n=5-8): A Comprehensive Solid State Study
    Bardelang, David
    Udachin, Konstantin A.
    Leek, Donald M.
    Margeson, James C.
    Chan, Gordon
    Ratcliffe, Christopher I.
    Ripmeestert, John A.
    [J]. CRYSTAL GROWTH & DESIGN, 2011, 11 (12) : 5598 - 5614
  • [5] Cucurbituril-Induced Supramolecular pKa Shift in Fluorescent Dyes and Its Prospective Applications
    Barooah, Nilotpal
    Mohanty, Jyotirmayee
    Pal, Haridas
    Bhasikuttan, Achikanath C.
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES INDIA SECTION A-PHYSICAL SCIENCES, 2014, 84 (01) : 1 - 17
  • [6] Cucurbituril-Based Molecular Recognition
    Barrow, Steven J.
    Kasera, Setu
    Rowland, Matthew J.
    del Barrio, Jesus
    Scherman, Oren A.
    [J]. CHEMICAL REVIEWS, 2015, 115 (22) : 12320 - 12406
  • [7] Drug Delivery by Controlling a Supramolecular Host-Guest Assembly with a Reversible Photoswitch
    Basilio, Nuno
    Pischel, Uwe
    [J]. CHEMISTRY-A EUROPEAN JOURNAL, 2016, 22 (43) : 15208 - 15211
  • [8] Efficient fluorescence enhancement and cooperative binding of an organic dye in a supra-biomolecular host-protein assembly
    Bhasikuttan, Achikanath C.
    Mohanty, Jyotirmayee
    Nau, Werner M.
    Pal, Haridas
    [J]. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2007, 46 (22) : 4120 - 4122
  • [9] Bukhzam A., 2017, J. Appl. Chem, V3, P237
  • [10] Influence of hydrophobic residues on the binding of CB[7] toward diammonium ions of common ammonium•••ammonium distance
    Cao, Liping
    Skalamera, Dani
    Zavalij, Peter Y.
    Hostas, Jiri
    Hobza, Pavel
    Mlinaric-Majerski, Kata
    Glaser, Robert
    Isaacs, Lyle
    [J]. ORGANIC & BIOMOLECULAR CHEMISTRY, 2015, 13 (22) : 6249 - 6254