Progress in Gene Editing and Metabolic Regulation of Saccharomyces cerevisiae with CRISPR/Cas9 Tools

被引:10
作者
Liang, Yaokun [1 ]
Gao, Song [1 ]
Qi, Xianghui [2 ]
Valentovich, Leonid N. [3 ]
An, Yingfeng [1 ]
机构
[1] Shenyang Agr Univ, Coll Biosci & Biotechnol, Shenyang 110065, Peoples R China
[2] Guangzhou Univ, Sch Life Sci, Guangzhou 511370, Guangdong, Peoples R China
[3] Natl Acad Sci Belarus, Inst Microbiol, Minsk 220072, BELARUS
基金
中国国家自然科学基金;
关键词
genetic engineering; metabolic engineering; secondary metabolites; stress tolerance; yeast; TRANSCRIPTION FACTORS; DELTA-INTEGRATION; GENOMIC DNA; RNA; SYSTEM; CRISPR-CAS9; MULTIPLEX; YEAST; ACTIVATION; INHIBITION;
D O I
10.1021/acssynbio.3c00685
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The CRISPR/Cas9 systems have been developed as tools for genetic engineering and metabolic engineering in various organisms. In this review, various aspects of CRISPR/Cas9 in Saccharomyces cerevisiae, from basic principles to practical applications, have been summarized. First, a comprehensive review has been conducted on the history of CRISPR/Cas9, successful cases of gene disruptions, and efficiencies of multiple DNA fragment insertions. Such advanced systems have accelerated the development of microbial engineering by reducing time and labor, and have enhanced the understanding of molecular genetics. Furthermore, the research progress of the CRISPR/Cas9-based systems in the production of high-value-added chemicals and the improvement of stress tolerance in S. cerevisiae have been summarized, which should have an important reference value for genetic and synthetic biology studies based on S. cerevisiae.
引用
收藏
页码:428 / 448
页数:21
相关论文
共 188 条
[1]   Search-and-replace genome editing without double-strand breaks or donor DNA [J].
Anzalone, Andrew V. ;
Randolph, Peyton B. ;
Davis, Jessie R. ;
Sousa, Alexander A. ;
Koblan, Luke W. ;
Levy, Jonathan M. ;
Chen, Peter J. ;
Wilson, Christopher ;
Newby, Gregory A. ;
Raguram, Aditya ;
Liu, David R. .
NATURE, 2019, 576 (7785) :149-+
[2]   A Cas9-based toolkit to program gene expression in Saccharomyces cerevisiae [J].
Apel, Amanda Reider ;
d'Espaux, Leo ;
Wehrs, Maren ;
Sachs, Daniel ;
Li, Rachel A. ;
Tong, Gary J. ;
Garber, Megan ;
Nnadi, Oge ;
Zhuang, William ;
Hillson, Nathan J. ;
Keasling, Jay D. ;
Mukhopadhyay, Aindrila .
NUCLEIC ACIDS RESEARCH, 2017, 45 (01) :496-508
[3]   The yeast platform engineered for synthetic gRNA-landing pads enables multiple gene integrations by a single gRNA/Cas9 system [J].
Baek, Sihyun ;
Utomo, Joseph Christian ;
Lee, Ji Young ;
Dalal, Kunal ;
Yoon, Yeo Joon ;
Ro, Dae-Kyun .
METABOLIC ENGINEERING, 2021, 64 :111-121
[4]   Deaminase-mediated multiplex genome editing in Escherichia coli [J].
Banno, Satomi ;
Nishida, Keiji ;
Arazoe, Takayuki ;
Mitsunobu, Hitoshi ;
Kondo, Akihiko .
NATURE MICROBIOLOGY, 2018, 3 (04) :423-429
[5]   Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision [J].
Bao, Zehua ;
HamediRad, Mohammad ;
Xue, Pu ;
Xiao, Han ;
Tasan, Ipek ;
Chao, Ran ;
Liang, Jing ;
Zhao, Huimin .
NATURE BIOTECHNOLOGY, 2018, 36 (06) :505-+
[6]   Homology-Integrated CRISPR-Cas (HI-CRISPR) System for One-Step Multigene Disruption in Saccharomyces cerevisiae [J].
Bao, Zehua ;
Xiao, Han ;
Lang, Jing ;
Zhang, Lu ;
Xiong, Xiong ;
Sun, Ning ;
Si, Tong ;
Zhao, Huimin .
ACS SYNTHETIC BIOLOGY, 2015, 4 (05) :585-594
[7]   Gene drive inhibition by the anti-CRISPR proteins AcrIIA2 and AcrIIA4 in Saccharomyces cerevisiae [J].
Basgall, Erianna M. ;
Goetting, Samantha C. ;
Goeckel, Megan E. ;
Giersch, Rachael M. ;
Roggenkamp, Emily ;
Schrock, Madison N. ;
Halloran, Megan ;
Finnigan, Gregory C. .
MICROBIOLOGY-SGM, 2018, 164 (04) :464-474
[8]   Highly active zinc-finger nucleases by extended modular assembly [J].
Bhakta, Mital S. ;
Henry, Isabelle M. ;
Ousterout, David G. ;
Das, Kumitaa Theva ;
Lockwood, Sarah H. ;
Meckler, Joshua F. ;
Wallen, Mark C. ;
Zykovich, Artem ;
Yu, Yawei ;
Leo, Heather ;
Xu, Lifeng ;
Gersbach, Charles A. ;
Segal, David J. .
GENOME RESEARCH, 2013, 23 (03) :530-538
[9]   CRISPR-Cas Systems in Bacteria and Archaea: Versatile Small RNAs for Adaptive Defense and Regulation [J].
Bhaya, Devaki ;
Davison, Michelle ;
Barrangou, Rodolphe .
ANNUAL REVIEW OF GENETICS, VOL 45, 2011, 45 :273-297
[10]   TAL Effectors: Customizable Proteins for DNA Targeting [J].
Bogdanove, Adam J. ;
Voytas, Daniel F. .
SCIENCE, 2011, 333 (6051) :1843-1846