AI in drug discovery and its clinical relevance

被引:75
|
作者
Qureshi, Rizwan [1 ,5 ]
Irfan, Muhammad [2 ]
Gondal, Taimoor Muzaffar [3 ]
Khan, Sheheryar [4 ]
Wu, Jia [5 ]
Hadi, Muhammad Usman [6 ]
Heymach, John [7 ,8 ]
Le, Xiuning [7 ,8 ]
Yan, Hong
Alam, Tanvir [1 ]
机构
[1] Hamad Bin Khalifa Univ, Coll Sci & Engn, Doha, Qatar
[2] Ghulam Ishaq Khan Inst Engn Sci & Technol, Fac Elect Engn, Swabi, Pakistan
[3] Super Univ, Fac Engn & Technol, Lahore 54000, Pakistan
[4] Hong Kong Polytech Univ, Sch Profess Educ & Execut Dev, Hong Kong, Peoples R China
[5] Univ Texas MD Anderson Canc Ctr, Dept Imaging Phys, Houston, TX 77030 USA
[6] Ulster Univ, Sch Engn, Belfast, North Ireland
[7] Univ Texas MD Anderson Canc Ctr, Div Canc Med, Dept Thorac Head & Neck Med Oncol, Houston, TX USA
[8] City Univ Hong Kong, Dept Elect Engn, Hong Kong, Hong Kong, Peoples R China
关键词
Artificial intelligence; Biotechnology; Graph neural networks; Molecule representation; Reinforcement learning; Drug discovery; Molecular dynamics simulation; MOLECULAR-DYNAMICS SIMULATIONS; PROTEIN-STRUCTURE PREDICTION; ARTIFICIAL-INTELLIGENCE; PHARMACEUTICAL-INDUSTRY; DESIGN; MODELS; IDENTIFICATION; REPRESENTATIONS; OPTIMIZATION; PERFORMANCE;
D O I
10.1016/j.heliyon.2023.e17575
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The COVID-19 pandemic has emphasized the need for novel drug discovery process. However, the journey from conceptualizing a drug to its eventual implementation in clinical settings is a long, complex, and expensive process, with many potential points of failure. Over the past decade, a vast growth in medical information has coincided with advances in computational hardware (cloud computing, GPUs, and TPUs) and the rise of deep learning. Medical data generated from large molecular screening profiles, personal health or pathology records, and public health organizations could benefit from analysis by Artificial Intelligence (AI) approaches to speed up and prevent failures in the drug discovery pipeline. We present applications of AI at various stages of drug discovery pipelines, including the inherently computational approaches of de novo design and prediction of a drug's likely properties. Open-source databases and AI based software tools that facilitate drug design are discussed along with their associated problems of molecule representation, data collection, complexity, labeling, and disparities among labels. How contemporary AI methods, such as graph neural networks, reinforcement learning, and generated models, along with structure-based methods, (i.e., molecular dynamics simulations and molecular docking) can contribute to drug discovery applications and analysis of drug responses is also explored. Finally, recent developments and investments in AI-based start-up companies for biotechnology, drug design and their current progress, hopes and promotions are discussed in this article.
引用
收藏
页数:23
相关论文
共 50 条
  • [1] The Role of AI in Drug Discovery
    Abbas, M. K. G.
    Rassam, Abrar
    Karamshahi, Fatima
    Abunora, Rehab
    Abouseada, Maha
    CHEMBIOCHEM, 2024, 25 (14)
  • [2] Trends of Artificial Intelligence (AI) Use in Drug Targets, Discovery and Development: Current Status and Future Perspectives
    Mahapatra, Manmayee
    Sahu, Chittaranjan
    Mohapatra, Snehamayee
    CURRENT DRUG TARGETS, 2024,
  • [3] Transforming cancer drug discovery with Big Data and AI
    Workman, Paul
    Antolin, Albert A.
    Al-Lazikani, Bissan
    EXPERT OPINION ON DRUG DISCOVERY, 2019, 14 (11) : 1089 - 1095
  • [4] CADD, AI and ML in drug discovery: A comprehensive review
    Vemula, Divya
    Jayasurya, Perka
    Sushmitha, Varthiya
    Kumar, Yethirajula Naveen
    Bhandari, Vasundhra
    EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2023, 181
  • [5] Critical assessment of AI in drug discovery
    Walters, W. Patrick
    Barzilay, Regina
    EXPERT OPINION ON DRUG DISCOVERY, 2021, 16 (09) : 937 - 947
  • [6] AI Trustworthy Challenges in Drug Discovery
    Ahadian, Pegah
    Guan, Qiang
    TRUSTWORTHY ARTIFICIAL INTELLIGENCE FOR HEALTHCARE, TAI4H 2024, 2024, 14812 : 1 - 12
  • [7] Artificial Intelligence (AI) Applications in Drug Discovery and Drug Delivery: Revolutionizing Personalized Medicine
    Serrano, Dolores R.
    Luciano, Francis C.
    Anaya, Brayan J.
    Ongoren, Baris
    Kara, Aytug
    Molina, Gracia
    Ramirez, Bianca I.
    Sanchez-Guirales, Sergio A.
    Simon, Jesus A.
    Tomietto, Greta
    Rapti, Chrysi
    Ruiz, Helga K.
    Rawat, Satyavati
    Kumar, Dinesh
    Lalatsa, Aikaterini
    PHARMACEUTICS, 2024, 16 (10)
  • [8] Unleashing the power of generative AI in drug discovery
    Gangwal, Amit
    Lavecchia, Antonio
    DRUG DISCOVERY TODAY, 2024, 29 (06)
  • [9] AI In Action: Redefining Drug Discovery and Development
    Kanakia, Anshul
    Sale, Mark
    Zhao, Liang
    Zhou, Zhu
    CTS-CLINICAL AND TRANSLATIONAL SCIENCE, 2025, 18 (02):
  • [10] From intuition to AI: evolution of small molecule representations in drug discovery
    Mcgibbon, Miles
    Shave, Steven
    Dong, Jie
    Gao, Yumiao
    Houston, Douglas R.
    Xie, Jiancong
    Yang, Yuedong
    Schwaller, Philippe
    Blay, Vincent
    BRIEFINGS IN BIOINFORMATICS, 2024, 25 (01)