Learning multi-organ and tumor segmentation from partially labeled datasets by a conditional dynamic attention network

被引:3
作者
Li, Lei [1 ]
Lian, Sheng [2 ,3 ]
Lin, Dazhen [4 ]
Luo, Zhiming [4 ]
Wang, Beizhan [1 ]
Li, Shaozi [4 ]
机构
[1] Xiamen Univ, Dept Software Engn, Xiamen, Fujian, Peoples R China
[2] Fuzhou Univ, Coll Comp & Data Sci, Fuzhou, Fujian, Peoples R China
[3] Fuzhou Univ, Fujian Key Lab Network Comp & Intelligent Informat, Fuzhou, Fujian, Peoples R China
[4] Xiamen Univ, Dept Artificial Intelligence, Xiamen 361005, Fujian, Peoples R China
基金
中国国家自然科学基金;
关键词
dynamic attention; multi-organ segmentation; partial supervision; ALGORITHM; NET;
D O I
10.1002/cpe.7869
中图分类号
TP31 [计算机软件];
学科分类号
081202 ; 0835 ;
摘要
Multi-organ segmentation is a critical prerequisite for many clinical applications. Deep learning-based approaches have recently achieved promising results on this task. However, they heavily rely on massive data with multi-organ annotated, which is labor- and expert-intensive and thus difficult to obtain. In contrast, single-organ datasets are easier to acquire, and many well-annotated ones are publicly available. It leads to the partially labeled issue: How to learn a unified multi-organ segmentation model from several single-organ datasets? Pseudo-label-based methods and conditional information-based methods make up the majority of existing solutions, where the former largely depends on the accuracy of pseudo-labels, and the latter has a limited capacity for task-related features. In this paper, we propose the Conditional Dynamic Attention Network (CDANet). Our approach is designed with two key components: (1) multisource parameter generator, fusing the conditional and multiscale information to better distinguish among different tasks, and (2) dynamic attention module, promoting more attention to task-related features. We have conducted extensive experiments on seven partially labeled challenging datasets. The results show that our method achieved competitive results compared with the advanced approaches, with an average Dice score of 75.08%. Additionally, the Hausdorff Distance is 26.31, which is a competitive result.
引用
收藏
页数:17
相关论文
共 60 条
[1]   The Liver Tumor Segmentation Benchmark (LiTS) [J].
Bilic, Patrick ;
Christ, Patrick ;
Li, Hongwei Bran ;
Vorontsov, Eugene ;
Ben-Cohen, Avi ;
Kaissis, Georgios ;
Szeskin, Adi ;
Jacobs, Colin ;
Mamani, Gabriel Efrain Humpire ;
Chartrand, Gabriel ;
Lohoefer, Fabian ;
Holch, Julian Walter ;
Sommer, Wieland ;
Hofmann, Felix ;
Hostettler, Alexandre ;
Lev-Cohain, Naama ;
Drozdzal, Michal ;
Amitai, Michal Marianne ;
Vivanti, Refael ;
Sosna, Jacob ;
Ezhov, Ivan ;
Sekuboyina, Anjany ;
Navarro, Fernando ;
Kofler, Florian ;
Paetzold, Johannes C. ;
Shit, Suprosanna ;
Hu, Xiaobin ;
Lipkova, Jana ;
Rempfler, Markus ;
Piraud, Marie ;
Kirschke, Jan ;
Wiestler, Benedikt ;
Zhang, Zhiheng ;
Huelsemeyer, Christian ;
Beetz, Marcel ;
Ettlinger, Florian ;
Antonelli, Michela ;
Bae, Woong ;
Bellver, Miriam ;
Bi, Lei ;
Chen, Hao ;
Chlebus, Grzegorz ;
Dam, Erik B. ;
Dou, Qi ;
Fu, Chi-Wing ;
Georgescu, Bogdan ;
Giro-I-Nieto, Xavier ;
Gruen, Felix ;
Han, Xu ;
Heng, Pheng-Ann .
MEDICAL IMAGE ANALYSIS, 2023, 84
[2]  
Boski M, 2017, 2017 10TH INTERNATIONAL WORKSHOP ON MULTIDIMENSIONAL (ND) SYSTEMS (NDS)
[3]   Large-Scale Machine Learning with Stochastic Gradient Descent [J].
Bottou, Leon .
COMPSTAT'2010: 19TH INTERNATIONAL CONFERENCE ON COMPUTATIONAL STATISTICS, 2010, :177-186
[4]   A Sharding Scheme-Based Many-Objective Optimization Algorithm for Enhancing Security in Blockchain-Enabled Industrial Internet of Things [J].
Cai, Xingjuan ;
Geng, Shaojin ;
Zhang, Jingbo ;
Wu, Di ;
Cui, Zhihua ;
Zhang, Wensheng ;
Chen, Jinjun .
IEEE TRANSACTIONS ON INDUSTRIAL INFORMATICS, 2021, 17 (11) :7650-7658
[5]   A Multicloud-Model-Based Many-Objective Intelligent Algorithm for Efficient Task Scheduling in Internet of Things [J].
Cai, Xingjuan ;
Geng, Shaojin ;
Wu, Di ;
Cai, Jianghui ;
Chen, Jinjun .
IEEE INTERNET OF THINGS JOURNAL, 2021, 8 (12) :9645-9653
[6]   A hybrid recommendation system with many-objective evolutionary algorithm [J].
Cai, Xingjuan ;
Hu, Zhaoming ;
Zhao, Peng ;
Zhang, WenSheng ;
Chen, Jinjun .
EXPERT SYSTEMS WITH APPLICATIONS, 2020, 159
[7]   A many-objective optimization recommendation algorithm based on knowledge mining [J].
Cai, Xingjuan ;
Hu, Zhaoming ;
Chen, Jinjun .
INFORMATION SCIENCES, 2020, 537 :148-161
[8]   An under-sampled software defect prediction method based on hybrid multi-objective cuckoo search [J].
Cai, Xingjuan ;
Niu, Yun ;
Geng, Shaojin ;
Zhang, Jiangjiang ;
Cui, Zhihua ;
Li, Jianwei ;
Chen, Jinjun .
CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, 2020, 32 (05)
[9]   QoS-aware service recommendation based on relational topic model and factorization machines for IoT Mashup applications [J].
Cao, Buqing ;
Liu, Jianxun ;
Wen, Yiping ;
Li, Hongtao ;
Xiao, Qiaoxiang ;
Chen, Jinjun .
JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING, 2019, 132 :177-189
[10]   Multi-target segmentation of pancreas and pancreatic tumor based on fusion of attention mechanism [J].
Cao, Luyang ;
Li, Jianwei ;
Chen, Shu .
BIOMEDICAL SIGNAL PROCESSING AND CONTROL, 2023, 79