growth;
random effects;
size-at-age;
weight-at-age;
Woods Hole Assessment Model (WHAM);
AUTOMATIC DIFFERENTIATION;
AGE;
RECRUITMENT;
SELECTIVITY;
LIKELIHOOD;
BIAS;
D O I:
10.1093/icesjms/fsad133
中图分类号:
S9 [水产、渔业];
学科分类号:
0908 ;
摘要:
State-space assessment models (SSMs) have garnered attention recently because of their ability to estimate time variation in biological and fisheries processes such as recruitment, natural mortality, catchability, and selectivity. However, current SSMs cannot model time-varying growth internally nor accept length data, limiting their use. Here, we expand the Woods Hole Assessment Model to incorporate new approaches to modelling changes in growth using a combination of parametric and nonparametric approaches while fitting to length and weight data. We present these new features and apply them to data for three important Alaskan stocks with distinct data and model needs. We conduct a "selftest" simulation experiment to ensure the unbiasedness and statistical efficiency of model estimates and predictions. This research presents the first SSM that can be applied when length data are a key source of information, variation in growth is an essential part of the dynamics of the assessed stock, or when linking climate variables to growth in hindcasts or forecasts is relevant. Consequently, the state-space approach and growth estimation can be applied to more fish stocks worldwide, facilitating real-world applications and implementation of simulation experiments for performance evaluation of SSMs for the many stocks whose assessments rely on length data.
机构:
Michigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA
NOAA, Natl Marine Fisheries Serv, Northeast Fisheries Sci Ctr, Woods Hole, MA 02543 USAMichigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA
Liljestrand, Emily M.
Bence, James R.
论文数: 0引用数: 0
h-index: 0
机构:
Michigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USAMichigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA
Bence, James R.
Deroba, Jonathan J.
论文数: 0引用数: 0
h-index: 0
机构:
NOAA, Natl Marine Fisheries Serv, Northeast Fisheries Sci Ctr, Woods Hole, MA 02543 USAMichigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA
机构:
Japan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Shibata, Yasutoki
Nagao, Jiro
论文数: 0引用数: 0
h-index: 0
机构:
Japan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Hachinohe Field Stn, Hachinohe, Aomori, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Nagao, Jiro
Narimatsu, Yoji
论文数: 0引用数: 0
h-index: 0
机构:
Japan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Hachinohe Field Stn, Hachinohe, Aomori, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Narimatsu, Yoji
Morikawa, Eisuke
论文数: 0引用数: 0
h-index: 0
机构:
Japan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Hachinohe Field Stn, Hachinohe, Aomori, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Morikawa, Eisuke
Suzuki, Yuto
论文数: 0引用数: 0
h-index: 0
机构:
Japan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Hachinohe Field Stn, Hachinohe, Aomori, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Suzuki, Yuto
Tokioka, Shun
论文数: 0引用数: 0
h-index: 0
机构:
Japan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Hachinohe Field Stn, Hachinohe, Aomori, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Tokioka, Shun
Yamada, Manabu
论文数: 0引用数: 0
h-index: 0
机构:
Fukushima Prefectural Res Inst Fisheries Resource, Fukushima, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Yamada, Manabu
Kakehi, Shigeho
论文数: 0引用数: 0
h-index: 0
机构:
Japan Fisheries Res & Educ Agcy, Thiogama Field Stn, Fisheries Resources Inst, Natl Res & Dev Agcy, Shiogama, Miyagi, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
Kakehi, Shigeho
Okamura, Hiroshi
论文数: 0引用数: 0
h-index: 0
机构:
Japan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, JapanJapan Fisheries Res & Educ Agcy, Fisheries Resources Inst, Natl Res & Dev Agcy, Yokohama, Kanagawa, Japan
机构:
Michigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USAMichigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA
Liljestrand, Emily M.
Bence, James R.
论文数: 0引用数: 0
h-index: 0
机构:
Michigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USAMichigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA
Bence, James R.
Deroba, Jonathan J.
论文数: 0引用数: 0
h-index: 0
机构:
Natl Marine Fisheries Serv, NOAA, Northeast Fisheries Sci Ctr, Woods Hole, MA 02543 USAMichigan State Univ, Quantitat Fisheries Ctr, Dept Fisheries & Wildlife, E Lansing, MI 48824 USA