A Genome-Wide Association Study Identified Novel Genetic Susceptibility Loci for Oral Cancer in Taiwan

被引:7
作者
Bau, Da-Tian [1 ,2 ,3 ]
Liu, Ting-Yuan [4 ]
Tsai, Chia-Wen [1 ,2 ]
Chang, Wen-Shin [1 ,2 ]
Gu, Jian [5 ]
Yang, Jai-Sing [4 ]
Shih, Liang-Chun [1 ,2 ]
Tsai, Fuu-Jen [6 ,7 ]
机构
[1] China Med Univ, Grad Inst Biomed Sci, Taichung 404333, Taiwan
[2] China Med Univ Hosp, Dept Med Res, Terry Fox Canc Res Lab, Taichung 404327, Taiwan
[3] Asia Univ, Dept Bioinformat & Med Engn, Taichung 41354, Taiwan
[4] China Med Univ, China Med Univ Hosp, Dept Med Res, Taichung 404327, Taiwan
[5] Univ Texas MD Anderson Canc Ctr, Dept Epidemiol, Houston, TX 77030 USA
[6] China Med Univ Hosp, Human Genet Ctr, Dept Med Res, Taichung 404327, Taiwan
[7] China Med Univ Hosp, Dept Med Genet, Taichung 404327, Taiwan
关键词
oral cancer; genome-wide association study; SNP; HLA; TERT; TPRS1; TMED3; NECK-CANCER; TERT-CLPTM1L LOCUS; CELL-CYCLE; RISK; POLYMORPHISMS; HEAD; VARIANTS; SMOKING; DISEASE; TRPS1;
D O I
10.3390/ijms24032789
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Taiwan has the highest incidence rate of oral cancer in the world. Although oral cancer is mostly an environmentally induced cancer, genetic factors also play an important role in its etiology. Genome-wide association studies (GWAS) have identified nine susceptibility regions for oral cancers in populations of European descent. In this study, we performed the first GWAS of oral cancer in Taiwan with 1529 cases and 44,572 controls. We confirmed two previously reported loci on the 6p21.33 (HLA-B) and 6p21.32 (HLA-DQ gene cluster) loci, highlighting the importance of the human leukocyte antigen and, hence, the immunologic mechanisms in oral carcinogenesis. The TERT-CLMPT1L locus on 5p15.33, the 4q23 ADH1B locus, and the LAMC3 locus on 9q34.12 were also consistent in the Taiwanese. We found two new independent loci on 6p21.32, rs401775 in SKIV2L gene and rs9267798 in TNXB gene. We also found two suggestive novel Taiwanese-specific loci near the TPRS1 gene on 8q23.3 and in the TMED3 gene on 15q25.1. This study identified both common and unique oral cancer susceptibility loci in the Taiwanese as compared to populations of European descent and shed significant light on the etiology of oral cancer in Taiwan.
引用
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页数:13
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