Multimodal learning for temporal relation extraction in clinical texts

被引:3
作者
Knez, Timotej [1 ,2 ]
Zitnik, Slavko [1 ]
机构
[1] Univ Ljubljana, Fac Comp & Informat Sci, Ljubljana 1000, Slovenia
[2] Univ Ljubljana, Fac Comp & Informat Sci, Vecna Pot 113, Ljubljana 1000, Slovenia
关键词
temporal relation extraction; knowledge graphs; natural language processing; transformer-architecture; SYSTEM;
D O I
10.1093/jamia/ocae059
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Objectives This study focuses on refining temporal relation extraction within medical documents by introducing an innovative bimodal architecture. The overarching goal is to enhance our understanding of narrative processes in the medical domain, particularly through the analysis of extensive reports and notes concerning patient experiences.Materials and Methods Our approach involves the development of a bimodal architecture that seamlessly integrates information from both text documents and knowledge graphs. This integration serves to infuse common knowledge about events into the temporal relation extraction process. Rigorous testing was conducted on diverse clinical datasets, emulating real-world scenarios where the extraction of temporal relationships is paramount.Results The performance of our proposed bimodal architecture was thoroughly evaluated across multiple clinical datasets. Comparative analyses demonstrated its superiority over existing methods reliant solely on textual information for temporal relation extraction. Notably, the model showcased its effectiveness even in scenarios where not provided with additional information.Discussion The amalgamation of textual data and knowledge graph information in our bimodal architecture signifies a notable advancement in the field of temporal relation extraction. This approach addresses the critical need for a more profound understanding of narrative processes in medical contexts.Conclusion In conclusion, our study introduces a pioneering bimodal architecture that harnesses the synergy of text and knowledge graph data, exhibiting superior performance in temporal relation extraction from medical documents. This advancement holds significant promise for improving the comprehension of patients' healthcare journeys and enhancing the overall effectiveness of extracting temporal relationships in complex medical narratives.
引用
收藏
页码:1380 / 1387
页数:9
相关论文
共 32 条
[1]  
[Anonymous], 2018, P 27 INT C COMP LING
[2]  
Bethard S., 2013, 2 JOINT C LEXICAL CO, P10
[3]  
Bethard Steven., 2016, P 10 INT WORKSH SEM, P1052
[4]   The Unified Medical Language System (UMLS): integrating biomedical terminology [J].
Bodenreider, O .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D267-D270
[5]   TEMPTING system: A hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries [J].
Chang, Yung-Chun ;
Dai, Hong-Jie ;
Wu, Johnny Chi-Yang ;
Chen, Jian-Ming ;
Tsai, Richard Tzong-Han ;
Hsu, Wen-Lian .
JOURNAL OF BIOMEDICAL INFORMATICS, 2013, 46 :S54-S62
[6]   AHWCI: A Prototype Tool for Identifying High-Level Workflow Changes [J].
Chen, Fangfei ;
Song, Wei ;
Zhang, Chengzhen ;
Li, Xuansong ;
Zhang, Pengcheng .
2017 24TH ASIA-PACIFIC SOFTWARE ENGINEERING CONFERENCE WORKSHOPS (APSECW), 2017, :1-4
[7]  
Dligach D., 2021, ENTITYBERT ENTITY CE
[8]   Exploiting aspectual features and connecting words for summarization-inspired temporal-relation extraction [J].
Dorr, Bonnie J. ;
Gaasterland, Terry .
INFORMATION PROCESSING & MANAGEMENT, 2007, 43 (06) :1681-1704
[9]  
Gaizauskas R, 2006, TIME 2006: THIRTEENTH INTERNATIONAL SYMPOSIUM ON TEMPORAL REPRESENTATION AND REASONING, PROCEEDINGS, P188
[10]  
Harry Caufield J., 2019, medRxiv, P19009118