Artificial intelligence approach in identification of differentially expressed genes of methyl glycoside against myocardial infarction

被引:1
|
作者
Kosanam, Sreya [1 ]
Pasupula, Rajeshwari [1 ]
机构
[1] KL Deemed Univ, Koneru Lakshmaiah Educ Fdn, Coll Pharm, Dept Pharmacol, Vaddeswaram, Andhra Prades, India
关键词
Myocardial infarction; Differentially expressed gene;
D O I
10.1007/s13596-023-00691-5
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
To predict the targets of small molecules from traditional plants using an artificial intelligence (AI) approach for myocardial infarction. In this study, we used different web servers and software to predict the targets of small molecule from plant of interest. The methanolic extract of Aganosma dichotoma was screened and the presence of small molecules was confirmed by GC-MS analysis. In this study, Methyl beta d-xylopyranoside is a Methyl glycoside, which was identified as a small molecule (164.16 gms/mol). Pharmacokinetic and toxicity prediction of methyl glycoside showed good bioavailability, accepting the five rules of Lipinki and LD50 & GE; 5000 mg/kg. Differentially expressed genes were identified from the datasets and overlapping genes were assessed for gene enrichment analysis pathways with p < 0.05. A PPI network was constructed and hub genes were identified. Anti-oxidant potency of small molecule is validated through in-vitro anti-oxidant activity through DPPH and ABTS analysis where, small molecule DPPH, ABTS activity was reported to have an IC50 value of 51.09%, 80.67% and 48.41%, 90.19% at 0.1 & mu;M/ml, 0.5 & mu;M/ml concentrations respectively. The small molecule methyl beta d-xylopyranoside is a robust antioxidant that may act against myocardial infarction caused by ischemia and free radical generation, but needs to be validated through further in vivo studies.
引用
收藏
页码:243 / 252
页数:10
相关论文
共 50 条
  • [21] Systematic identification and molecular characterization of genes differentially expressed in breast and ovarian cancer
    Dahl, E
    Sadr-Nabavi, A
    Klopocki, E
    Betz, B
    Grube, S
    Kreutzfeld, R
    Himmelfarb, M
    An, HX
    Gelling, S
    Klaman, I
    Hinzmann, B
    Kristiansen, G
    Grützmann, R
    Kuner, R
    Petschke, B
    Rhiem, K
    Wiechen, K
    Sers, C
    Wiestler, O
    Schneider, A
    Höfler, H
    Nährig, J
    Dietel, M
    Schäfer, R
    Rosenthal, A
    Schmutzler, R
    Dürst, M
    Meindl, A
    Niederacher, D
    JOURNAL OF PATHOLOGY, 2005, 205 (01) : 21 - 28
  • [22] Identification of differentially expressed genes in broiler offspring under maternal folate deficiency
    Xing, Jinyi
    Jing, Wenqian
    Zhang, Yujie
    Liu, Lin
    Xu, Junjie
    Chen, Xianwei
    PHYSIOLOGICAL GENOMICS, 2018, 50 (12) : 1015 - 1025
  • [23] Identification of differentially expressed genes in human uterine leiomyomas using differential display
    Bin LI
    Mei SUN
    Bin HE
    Jin YU
    You Duan ZHANG
    Yong Lian ZHANG
    Cell Research, 2002, 12 : 39 - 45
  • [24] Identification of differentially expressed genes regulated by transcription factors in glioblastomas by bioinformatics analysis
    Wei, Bo
    Wang, Le
    Du, Chao
    Hu, Guozhang
    Wang, Lina
    Jin, Ying
    Kong, Daliang
    MOLECULAR MEDICINE REPORTS, 2015, 11 (04) : 2548 - 2554
  • [25] Identification of differentially expressed genes in human uterine leiomyomas using differential display
    Li, B
    Sun, M
    He, B
    Yu, J
    Zhang, YD
    Zhang, YL
    CELL RESEARCH, 2002, 12 (01) : 39 - 45
  • [26] Identification of important genes related to anoikis in acute myocardial infarction
    Song, Puwei
    Yakufujiang, Yasen
    Zhou, Jianghui
    Gu, Shaorui
    Wang, Wenli
    Huo, Zhengyuan
    JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2024, 28 (08)
  • [27] Uncovering potential differentially expressed miRNAs and targeted mRNAs in myocardial infarction based on integrating analysis
    Wang, Shiai
    Cao, Na
    MOLECULAR MEDICINE REPORTS, 2020, 22 (05) : 4383 - 4395
  • [28] Identification and functional analysis of differentially expressed genes related to obesity using DNA microarray
    Du, J. Y.
    Yang, H.
    Tian, D. R.
    Wang, Q. M.
    He, L.
    GENETICS AND MOLECULAR RESEARCH, 2014, 13 (01): : 64 - 72
  • [29] Identification of differentially expressed genes in rat silicosis model by suppression subtractive hybridization analysis
    Jin, Zhongyuan
    Liu, Baoan
    Feng, Deyun
    Chen, Chen
    Li, Xiang
    Hu, Yongbin
    Peng, Jinwu
    Liu, Yu
    Du, Jing
    Fu, Chunyan
    Wen, Jifang
    ACTA BIOCHIMICA ET BIOPHYSICA SINICA, 2008, 40 (08) : 740 - 746
  • [30] Identification of differentially expressed and developmentally regulated genes in medulloblastoma using suppression subtraction hybridization
    Naoki Yokota
    Todd G Mainprize
    Michael D Taylor
    Tomohiko Kohata
    Michael Loreto
    Shigeo Ueda
    Wieslaw Dura
    Wiesia Grajkowska
    John S Kuo
    James T Rutka
    Oncogene, 2004, 23 : 3444 - 3453