Single-cell genomics in AML: extending the frontiers of AML research

被引:36
作者
Ediriwickrema, Asiri [1 ,2 ,3 ]
Gentles, Andrew J. [4 ]
Majeti, Ravindra [1 ,3 ,5 ]
机构
[1] Stanford Univ, Sch Med, Dept Med, Div Hematol, Stanford, CA 94305 USA
[2] Stanford Univ, Canc Inst, Sch Med, Stanford, CA 94305 USA
[3] Stanford Univ, Inst Stem Cell Biol & Regenerat Med, Stanford, CA 94305 USA
[4] Stanford Univ, Sch Med, Dept Biomed Data Sci, Stanford, CA 94305 USA
[5] Stanford Univ, Lokey Stem Cell Res Bldg,265 Campus Dr,G3021B,MC54, Stanford, CA 94305 USA
基金
美国国家卫生研究院;
关键词
ACUTE MYELOID-LEUKEMIA; RESIDUAL DISEASE DETECTION; WORLD-HEALTH-ORGANIZATION; HEMATOPOIETIC STEM-CELLS; ABILITY IN-VITRO; PROGNOSTIC RELEVANCE; CLASSIFICATION; EXPRESSION; REVEALS; MUTATIONS;
D O I
10.1182/blood.2021014670
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
The era of genomic medicine has allowed acute myeloid leukemia (AML) researchers to improve disease characterization, optimize risk-stratification systems, and develop new treatments. Although there has been significant progress, AML remains a lethal cancer because of its remarkably complex and plastic cellular architecture. This degree of heterogeneity continues to pose a major challenge, because it limits the ability to identify and therefore eradicate the cells responsible for leukemogenesis and treatment failure. In recent years, the field of single-cell genomics has led to unprecedented strides in the ability to characterize cellular heterogeneity, and it holds promise for the study of AML. In this review, we highlight advancements in single-cell technologies, outline important shortcomings in our understanding of AML biology and clinical management, and discuss how single-cell genomics can address these shortcomings as well as provide unique opportunities in basic and translational AML research.
引用
收藏
页码:345 / 355
页数:11
相关论文
共 121 条
[1]   A comparison of automatic cell identification methods for single-cell RNA sequencing data [J].
Abdelaal, Tamim ;
Michielsen, Lieke ;
Cats, Davy ;
Hoogduin, Dylan ;
Mei, Hailiang ;
Reinders, Marcel J. T. ;
Mahfouz, Ahmed .
GENOME BIOLOGY, 2019, 20 (01)
[2]   The 2016 revision to the World Health Organization classification of myeloid neoplasms and acute leukemia [J].
Arber, Daniel A. ;
Orazi, Attilio ;
Hasserjian, Robert ;
Thiele, Jurgen ;
Borowitz, Michael J. ;
Le Beau, Michelle M. ;
Bloomfield, Clara D. ;
Cazzola, Mario ;
Vardiman, James W. .
BLOOD, 2016, 127 (20) :2391-2405
[3]   Clonal architecture predicts clinical outcomes and drug sensitivity in acute myeloid leukemia [J].
Benard, Brooks A. ;
Leak, Logan B. ;
Azizi, Armon ;
Thomas, Daniel ;
Gentles, Andrew J. ;
Majeti, Ravindra .
NATURE COMMUNICATIONS, 2021, 12 (01)
[4]   PROPOSALS FOR CLASSIFICATION OF ACUTE LEUKEMIAS [J].
BENNETT, JM ;
CATOVSKY, D ;
DANIEL, MT ;
FLANDRIN, G ;
GALTON, DAG ;
GRALNICK, HR ;
SULTAN, C .
BRITISH JOURNAL OF HAEMATOLOGY, 1976, 33 (04) :451-&
[5]   Lack of expression of Thy-1 (CD90) on acute myeloid leukemia cells with long-term proliferative ability in vitro and in vivo [J].
Blair, A ;
Hogge, DE ;
Ailles, LE ;
Lansdorp, PM ;
Sutherland, HJ .
BLOOD, 1997, 89 (09) :3104-3112
[6]   Most acute myeloid leukemia progenitor cells with long-term proliferative ability in vitro and in vivo have the phenotype CD34+/CD71-/HLA-DR- [J].
Blair, A ;
Hogge, DE ;
Sutherland, HJ .
BLOOD, 1998, 92 (11) :4325-4335
[7]   Human acute myeloid leukemia is organized as a hierarchy that originates from a primitive hematopoietic cell [J].
Bonnet, D ;
Dick, JE .
NATURE MEDICINE, 1997, 3 (07) :730-737
[8]   An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells (vol 181, pg 1410, 2020) [J].
Bowling, Sarah ;
Sritharan, Duluxan ;
Osorio, Fernando G. ;
Nguyen, Maximilian ;
Cheung, Priscilla ;
Rodriguez-Fraticelli, Alejo ;
Patel, Sachin ;
Yuan, Wei-Chien ;
Fujiwara, Yuko ;
Li, Bin E. ;
Orkin, Stuart H. ;
Hormoz, Sahand ;
Camargo, Fernando D. .
CELL, 2020, 181 (07) :1693-1694
[9]   Single-cell chromatin accessibility reveals principles of regulatory variation [J].
Buenostro, Jason D. ;
Wu, Beijing ;
Litzenburger, Ulrike M. ;
Ruff, Dave ;
Gonzales, Michael L. ;
Snyder, Michael P. ;
Chang, Howard Y. ;
Greenleaf, William J. .
NATURE, 2015, 523 (7561) :486-U264
[10]   Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation [J].
Buenrostro, Jason D. ;
Corces, M. Ryan ;
Lareau, Caleb A. ;
Wu, Beijing ;
Schep, Alicia N. ;
Aryee, Martin J. ;
Majeti, Ravindra ;
Chang, Howard Y. ;
Greenleaf, William J. .
CELL, 2018, 173 (06) :1535-+