Measuring pico-Newton Forces with Lipid Anchors as Force Sensors in Molecular Dynamics Simulations

被引:2
作者
Kav, Batuhan [1 ,2 ]
Weikl, Thomas R. R. [1 ]
Schneck, Emanuel [1 ,3 ]
机构
[1] Max Planck Inst Colloids & Interfaces, D-14467 Potsdam, Germany
[2] Forschungszentrum Julich, Inst Biol Informat Process Struct Biochem IBI 7, D-52428 Julich, Germany
[3] Tech Univ Darmstadt, Inst Condensed Matter Phys, D-64289 Darmstadt, Germany
关键词
PARTICLE MESH EWALD; CELL-ADHESION; MEMBRANE ADHESION; FREE-ENERGY; BILAYER-MEMBRANES; OSMOTIC-PRESSURE; PROTEIN; MECHANISM; KINETICS; AMBER;
D O I
10.1021/acs.jpcb.3c00063
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Binding forces between biomolecules are ubiquitous in nature but sometimes as weak as a few pico-Newtons (pN). In many cases, the binding partners are attached to biomembranes with the help of a lipid anchor. One important example are glycolipids that promote membrane adhesion through weak carbohydrate-carbohydrate binding between adjacent membranes. Here, we use molecular dynamics (MD) simulations to quantify the forces generated by bonds involving membrane-anchored molecules. We introduce a method in which the protrusion of the lipid anchors from the membrane acts as the force sensor. Our results with two different glycolipids reveal binding forces of up to 20 pN and corroborate the recent notion that carbohydrate- carbohydrate interactions are generic rather than specific.
引用
收藏
页码:4081 / 4089
页数:9
相关论文
共 50 条
  • [21] Paramfit: Automated Optimization of Force Field Parameters for Molecular Dynamics Simulations
    Betz, Robin M.
    Walker, Ross C.
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2015, 36 (02) : 79 - 87
  • [22] Modern protein force fields behave comparably in molecular dynamics simulations
    Price, DJ
    Brooks, CL
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (11) : 1045 - 1057
  • [23] Molecular Dynamics Simulations of the Permeation of Bisphenol A and Pore Formation in a Lipid Membrane
    Chen, Liang
    Chen, Junlang
    Zhou, Guoquan
    Wang, Yu
    Xu, Can
    Wang, Xiaogang
    [J]. SCIENTIFIC REPORTS, 2016, 6
  • [25] Study of lipid heterogeneity on bilayer membranes using molecular dynamics simulations
    Kumar, Nandan
    Sastry, G. Narahari
    [J]. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2021, 108 (108)
  • [26] Molecular dynamics simulations of the effects of sodium dodecyl sulfate on lipid bilayer
    Xu, Bin
    Lin, Wen-Qiang
    Wang, Xiao-Gang
    Zeng, Song-wei
    Zhou, Guo-Quan
    Chen, Jun-Lang
    [J]. CHINESE PHYSICS B, 2017, 26 (03)
  • [27] Molecular dynamics simulations of doxorubicin in sphingomyelin-based lipid membranes
    Siani, Paulo
    Donadoni, Edoardo
    Ferraro, Lorenzo
    Re, Francesca
    Di Valentin, Cristiana
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2022, 1864 (01):
  • [28] Molecular dynamics simulations of intracellular lipid droplets: a new tool in the toolbox
    Sapia, Jennifer
    Vanni, Stefano
    [J]. FEBS LETTERS, 2024, 598 (10) : 1143 - 1153
  • [29] Atomistic Molecular Dynamics Simulations of Propofol and Fentanyl in Phosphatidylcholine Lipid Bilayers
    Faulkner, Christopher
    Santos-Carballal, David
    Plant, David F.
    de Leeuw, Nora H.
    [J]. ACS OMEGA, 2020, 5 (24): : 14340 - 14353
  • [30] Dynamic Structure Factors from Lipid Membrane Molecular Dynamics Simulations
    Brandt, Erik G.
    Edholm, Olle
    [J]. BIOPHYSICAL JOURNAL, 2009, 96 (05) : 1828 - 1838