Measuring pico-Newton Forces with Lipid Anchors as Force Sensors in Molecular Dynamics Simulations

被引:2
|
作者
Kav, Batuhan [1 ,2 ]
Weikl, Thomas R. R. [1 ]
Schneck, Emanuel [1 ,3 ]
机构
[1] Max Planck Inst Colloids & Interfaces, D-14467 Potsdam, Germany
[2] Forschungszentrum Julich, Inst Biol Informat Process Struct Biochem IBI 7, D-52428 Julich, Germany
[3] Tech Univ Darmstadt, Inst Condensed Matter Phys, D-64289 Darmstadt, Germany
关键词
PARTICLE MESH EWALD; CELL-ADHESION; MEMBRANE ADHESION; FREE-ENERGY; BILAYER-MEMBRANES; OSMOTIC-PRESSURE; PROTEIN; MECHANISM; KINETICS; AMBER;
D O I
10.1021/acs.jpcb.3c00063
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Binding forces between biomolecules are ubiquitous in nature but sometimes as weak as a few pico-Newtons (pN). In many cases, the binding partners are attached to biomembranes with the help of a lipid anchor. One important example are glycolipids that promote membrane adhesion through weak carbohydrate-carbohydrate binding between adjacent membranes. Here, we use molecular dynamics (MD) simulations to quantify the forces generated by bonds involving membrane-anchored molecules. We introduce a method in which the protrusion of the lipid anchors from the membrane acts as the force sensor. Our results with two different glycolipids reveal binding forces of up to 20 pN and corroborate the recent notion that carbohydrate- carbohydrate interactions are generic rather than specific.
引用
收藏
页码:4081 / 4089
页数:9
相关论文
共 50 条
  • [1] Molecular dynamics simulations of glyphosate in a DPPC lipid bilayer
    Frigini, Ezequiel N.
    Lopez Cascales, J. J.
    Porasso, Rodolfo D.
    CHEMISTRY AND PHYSICS OF LIPIDS, 2018, 213 : 111 - 117
  • [2] Force fields and molecular dynamics simulations
    Gonzalez, M. A.
    NEUTRONS ET SIMULATIONS, JDN 18, 2010, : 169 - 200
  • [3] An overview of molecular dynamics simulations of oxidized lipid systems, with a comparison of ELBA and MARTINI force fields for coarse grained lipid simulations
    Siani, P.
    de Souza, R. M.
    Dias, L. G.
    Itri, R.
    Khandelia, H.
    BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2016, 1858 (10): : 2498 - 2511
  • [4] Force spectroscopy of polymer desorption: theory and molecular dynamics simulations
    Paturej, Jaroslaw
    Dubbeldam, Johan L. A.
    Rostiashvili, Vakhtang G.
    Milchev, Andrey
    Vilgis, Thomas A.
    SOFT MATTER, 2014, 10 (16) : 2785 - 2799
  • [5] Lipid Configurations from Molecular Dynamics Simulations
    Pezeshkian, Weria
    Khandelia, Himanshu
    Marsh, Derek
    BIOPHYSICAL JOURNAL, 2018, 114 (08) : 1895 - 1907
  • [6] Effect of quercetin on lipid membrane rigidity: assessment by atomic force microscopy and molecular dynamics simulations
    Eid, Jad
    Jraij, Alia
    Greige-Gerges, Helene
    Monticelli, Luca
    BBA ADVANCES, 2021, 1
  • [7] Molecular Dynamics Simulations of Lipid Membrane Electroporation
    Delemotte, Lucie
    Tarek, Mounir
    JOURNAL OF MEMBRANE BIOLOGY, 2012, 245 (09) : 531 - 543
  • [8] Molecular Dynamics Simulations of Curved Lipid Membranes
    Larsen, Andreas Haahr
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (15)
  • [9] Measuring cell adhesion forces with the atomic force microscope at the molecular level
    Benoit, M
    Gaub, HE
    CELLS TISSUES ORGANS, 2002, 172 (03) : 174 - 189
  • [10] Molecular Dynamics Simulations of Hemolytic Peptide δ-Lysin Interacting with a POPC Lipid Bilayer
    Lorello, Kim M.
    Kreutzberger, Alex J.
    King, Allison M.
    Lee, Hee-Seung
    BULLETIN OF THE KOREAN CHEMICAL SOCIETY, 2014, 35 (03): : 783 - 792