Mechanistic Study of the Conductance and Enhanced Single-Molecule Detection in a Polymer-Electrolyte Nanopore

被引:14
作者
Marcuccio, Fabio [1 ,2 ]
Soulias, Dimitrios [1 ,2 ]
Chau, Chalmers C. C. [1 ,2 ,3 ,4 ]
Radford, Sheena E. [3 ,4 ]
Hewitt, Eric [3 ,4 ]
Actis, Paolo [1 ,2 ,3 ,4 ]
Edwards, Martin Andrew [5 ]
机构
[1] Univ Leeds, Sch Elect & Elect Engn, Leeds LS2 9JT, W Yorkshire, England
[2] Univ Leeds, Bragg Ctr Mat Res, Leeds LS2 9JT, W Yorkshire, England
[3] Univ Leeds, Sch Mol & Cellular Biol, Leeds LS2 9JT, W Yorkshire, England
[4] Univ Leeds, Astbury Ctr Struct Mol Biol, Leeds LS2 9JT, W Yorkshire, England
[5] Univ Arkansas, Dept Chem & Biochem, Fayetteville, AR 72701 USA
来源
ACS NANOSCIENCE AU | 2023年 / 3卷 / 02期
基金
英国工程与自然科学研究理事会;
关键词
nanopipette; nanopore; finite-element modeling; nanofluidic diode; DNA; poly(ethylene) glycol; PEG; ION-CURRENT RECTIFICATION; DNA TRANSLOCATION; TRANSPORT; MODULATION; PROTEINS; OXIDE;
D O I
10.1021/acsnanoscienceau.2c00050
中图分类号
TB3 [工程材料学];
学科分类号
0805 ; 080502 ;
摘要
Solid-state nanopores have been widely employed in the detection of biomolecules, but low signal-to-noise ratios still represent a major obstacle in the discrimination of nucleic acid and protein sequences substantially smaller than the nanopore diameter. The addition of 50% poly(ethylene) glycol (PEG) to the external solution is a simple way to enhance the detection of such biomolecules. Here, we demonstrate with finite-element modeling and experiments that the addition of PEG to the external solution introduces a strong imbalance in the transport properties of cations and anions, drastically affecting the current response of the nanopore. We further show that the strong asymmetric current response is due to a polarity-dependent ion distribution and transport at the nanopipette tip region, leading to either ion depletion or enrichment for few tens of nanometers across its aperture. We provide evidence that a combination of the decreased/increased diffusion coefficients of cations/anions in the bath outside the nanopore and the interaction between a translocating molecule and the nanopore-bath interface is responsible for the increase in the translocation signals. We expect this new mechanism to contribute to further developments in nanopore sensing by suggesting that tuning the diffusion coefficients of ions could enhance the sensitivity of the system.
引用
收藏
页码:172 / 181
页数:10
相关论文
共 47 条
[1]   DNA-mediated fluctuations in ionic current through silicon oxide nanopore channels [J].
Chang, H ;
Kosari, F ;
Andreadakis, G ;
Alam, MA ;
Vasmatzis, G ;
Bashir, R .
NANO LETTERS, 2004, 4 (08) :1551-1556
[2]   Precise DNA Concentration Measurements with Nanopores by Controlled Counting [J].
Charron, Martin ;
Briggs, Kyle ;
King, Simon ;
Waugh, Matthew ;
Tabard-Cossa, Vincent .
ANALYTICAL CHEMISTRY, 2019, 91 (19) :12228-12237
[3]   Probing RNA Conformations Using a Polymer-Electrolyte Solid-State Nanopore [J].
Chau, Chalmers ;
Marcuccio, Fabio ;
Soulias, Dimitrios ;
Edwards, Martin Andrew ;
Tuplin, Andrew ;
Radford, Sheena E. ;
Hewitt, Eric ;
Actis, Paolo .
ACS NANO, 2022, 16 (12) :20075-20085
[4]   Macromolecular Crowding Enhances the Detection of DNA and Proteins by a Solid-State Nanopore [J].
Chau, Chalmers C. ;
Radford, Sheena E. ;
Hewitt, Eric W. ;
Actis, Paolo .
NANO LETTERS, 2020, 20 (07) :5553-5561
[5]   Nanopore fingerprinting of supramolecular DNA nanostructures [J].
Confederat, Samuel ;
Sandei, Ilaria ;
Mohanan, Gayathri ;
Walti, Christoph ;
Actis, Paolo .
BIOPHYSICAL JOURNAL, 2022, 121 (24) :4882-4891
[6]   Slowing DNA translocation in a solid-state nanopore [J].
Fologea, D ;
Uplinger, J ;
Thomas, B ;
McNabb, DS ;
Li, JL .
NANO LETTERS, 2005, 5 (09) :1734-1737
[7]   Comparing Current Noise in Biological and Solid-State Nanopores [J].
Fragasso, Alessio ;
Schmid, Sonja ;
Dekker, Cees .
ACS NANO, 2020, 14 (02) :1338-1349
[8]   Binding of Monovalent and Multivalent Metal Cations to Polyethylene Oxide in Methanol Probed by Electrophoretic and Diffusion NMR [J].
Giesecke, Marianne ;
Hallberg, Fredrik ;
Fang, Yuan ;
Stilbs, Peter ;
Furo, Istvan .
JOURNAL OF PHYSICAL CHEMISTRY B, 2016, 120 (39) :10358-10366
[9]   Estimation of Shape, Volume, and Dipole Moment of Individual Proteins Freely Transiting a Synthetic Nanopore [J].
Houghtaling, Jared ;
Ying, Cuifeng ;
Eggenberger, Olivia M. ;
Fennouri, Aziz ;
Nandivada, Santoshi ;
Acharjee, Mitu ;
Li, Jiali ;
Hall, Adam R. ;
Mayer, Michael .
ACS NANO, 2019, 13 (05) :5231-5242
[10]   Biological Nanopore Approach for Single-Molecule Protein Sequencing [J].
Hu, Zheng-Li ;
Huo, Ming-Zhu ;
Ying, Yi-Lun ;
Long, Yi-Tao .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2021, 60 (27) :14738-14749