Spatial Stochastic Model of the Pre-B Cell Receptor

被引:1
作者
Kerketta, Romica [1 ]
Erasmus, M. Frank [2 ]
Wilson, Bridget S. [3 ,4 ]
Halasz, Adam M. [5 ]
Edwards, Jeremy S. [4 ,6 ]
机构
[1] AbbVie Inc, Chicago, IL 60064 USA
[2] Specif Inc, Santa Fe, NM 87501 USA
[3] Univ New Mexico, Dept Pathol, Hlth Sci Ctr, Albuquerque, NM 87102 USA
[4] Univ New Mexico, Comprehens Canc Ctr, Hlth Sci Ctr, Albuquerque, NM 87102 USA
[5] West Virginia Univ, Dept Math, Morgantown, WV 26506 USA
[6] Univ New Mexico, Dept Chem & Chem Biol, Albuquerque, NM 87131 USA
关键词
Agent based models; cell signaling; rule-based models; stochastic simulation methods; SRC-FAMILY KINASES; EARLY EVENTS; SYK; ACTIVATION; LYN; BCR; PHOSPHORYLATION; TYROSINES; SITE; PROLIFERATION;
D O I
10.1109/TCBB.2022.3166149
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Survival and proliferation of immature B lymphocytes requires expression and tonic signaling of the pre-B cell receptor (pre-BCR). This low level, ligand-independent signaling is likely achieved through frequent, but short-lived, homo interactions. Tonic signaling is also central in the pathology of precursor B acute lymphoblastic leukemia (B-ALL). In order to understand how repeated, transient events can lead to sustained signaling and to assess the impact of receptor accumulation induced by the membrane landscape, we developed a spatial stochastic model of receptor aggregation and downstream signaling events. Our rule- and agent-based model builds on previous mature BCR signaling models and incorporates novel parameters derived from single particle tracking of pre-BCR on surfaces of two different B-ALL cell lines, 697 and Nalm6. Live cell tracking of receptors on the two cell lines revealed characteristic differences in their dimer dissociation rates and diffusion coefficients. We report here that these differences affect pre-BCR aggregation and consequent signal initiation events. Receptors on Nalm6 cells, which have a lower off-rate and lower diffusion coefficient, more frequently form higher order oligomers than pre-BCR on 697 cells, resulting in higher levels of downstream phosphorylation in the Nalm6 cell line.
引用
收藏
页码:683 / 693
页数:11
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