A guide to membraneless organelles and their various roles in gene regulation

被引:260
作者
Hirose, Tetsuro [1 ,2 ]
Ninomiya, Kensuke [1 ]
Nakagawa, Shinichi [3 ]
Yamazaki, Tomohiro [1 ]
机构
[1] Osaka Univ, Grad Sch Frontier Biosci, Suita, Osaka, Japan
[2] Osaka Univ, Inst Open & Transdisciplinary Res Initiat, Suita, Osaka, Japan
[3] Hokkaido Univ, Fac Pharmaceut Sci, Sapporo, Hokkaido, Japan
基金
日本科学技术振兴机构; 日本学术振兴会;
关键词
PML NUCLEAR-BODIES; P-BODY FORMATION; MESSENGER-RNA; CAJAL BODIES; PHASE-SEPARATION; STRESS GRANULES; NONCODING RNAS; HEAT-SHOCK; U2; SNRNA; U1;
D O I
10.1038/s41580-022-00558-8
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Membraneless organelles (MLOs) are detected in cells as dots of Introduction mesoscopic size. By undergoing phase separation into a liquid-like Features of membraneless or gel-like phase, MLOs contribute to intracellular compartmental- organelles ization of specific biological functions. In eukaryotes, dozens of MLOs Functions of membraneless have been identified, including the nucleolus, Cajal bodies, nuclear organelles speckles, paraspeckles, promyelocytic leukaemia protein (PML) Inter-organelle crosstalk nuclear bodies, nuclear stress bodies, processing bodies (P bodies) Membraneless organelles in and stress granules. MLOs contain specific proteins, of which many disease possess intrinsically disordered regions (1DRs), and nucleic acids, Emerging topics for future mainly RNA. Many MLOs contribute to gene regulation by different study mechanisms. Through sequestration of specific factors, MLOs promote biochemical reactions by simultaneously concentrating substrates and enzymes, and/or suppressing the activity of the sequestered factors elsewhere in the cell. Other MLOs construct inter-chromosomal hubs by associating with multiple loci, thereby contributing to the biogenesis of macromolecular machineries essential for gene expression, such as ribosomes and spliceosomes. The organization of many MLOs includes layers, which might have different biophysical properties and functions. MLOs are functionally interconnected and are involved in various diseases, prompting the emergence of therapeutics targeting them. In this Review, we introduce MLOs that are relevant to gene regulation and discuss their assembly, internal structure, gene-regulatory roles in transcription, RNA processing and translation, particularly in stress conditions, and their disease relevance.
引用
收藏
页码:288 / 304
页数:17
相关论文
共 143 条
[1]   NOPdb: Nucleolar Proteome Database-2008 update [J].
Ahmad, Yasmeen ;
Boisvert, Francois-Michel ;
Gregor, Peter ;
Cobley, Andy ;
Lamond, Angus I. .
NUCLEIC ACIDS RESEARCH, 2009, 37 :D181-D184
[2]   Phase separation drives aberrant chromatin looping and cancer development [J].
Ahn, Jeong Hyun ;
Davis, Eric S. ;
Daugird, Timothy A. ;
Zhao, Shuai ;
Quiroga, Ivana Yoseli ;
Uryu, Hidetaka ;
Li, Jie ;
Storey, Aaron J. ;
Tsai, Yi-Hsuan ;
Keeley, Daniel P. ;
Mackintosh, Samuel G. ;
Edmondson, Ricky D. ;
Byrum, Stephanie D. ;
Cai, Ling ;
Tackett, Alan J. ;
Zheng, Deyou ;
Legant, Wesley R. ;
Phanstiel, Douglas H. ;
Wang, Gang Greg .
NATURE, 2021, 595 (7868) :591-+
[3]   Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing [J].
Alberti, Simon ;
Hyman, Anthony A. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2021, 22 (03) :196-213
[4]   Stress granules regulate stress-induced paraspeckle assembly [J].
An, Haiyan ;
Tan, Jing Tong ;
Shelkovnikova, Tatyana A. .
JOURNAL OF CELL BIOLOGY, 2019, 218 (12) :4127-4140
[5]   Liquid-liquid phase separation as an organizing principle of intracellular space: overview of the evolution of the cell compartmentalization concept [J].
Antifeeva, Iuliia A. ;
Fonin, Alexander V. ;
Fefilova, Anna S. ;
Stepanenko, Olesya V. ;
Povarova, Olga I. ;
Silonov, Sergey A. ;
Kuznetsova, Irina M. ;
Uversky, Vladimir N. ;
Turoverov, Konstantin K. .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2022, 79 (05)
[6]   Adaptation to stressors by Systemic Protein Amyloidogenesis [J].
Audas, Timothy E. ;
Audas, Danielle E. ;
Jacob, Mathieu D. ;
Ho, J. J. David ;
Khacho, Mireille ;
Wang, Miling ;
Perera, J. Kishan ;
Gardiner, Caroline ;
Bennett, Clay A. ;
Head, Trajen ;
Kryvenko, Oleksandr N. ;
Jorda, Merce ;
Daunert, Sylvia ;
Malhotra, Arun ;
Trinkle-Mulcahy, Laura ;
Gonzalgo, Mark L. ;
Lee, Stephen .
DEVELOPMENTAL CELL, 2016, 39 (02) :155-168
[7]   Genetic variation associated with condensate dysregulation in disease [J].
Banani, Salman F. ;
Afeyan, Lena K. ;
Hawken, Susana W. ;
Henninger, Jonathan E. ;
Dall'Agnese, Alessandra ;
Clark, Victoria E. ;
Platt, Jesse M. ;
Oksuz, Ozgur ;
Hannett, Nancy M. ;
Sagi, Ido ;
Lee, Tong Ihn ;
Young, Richard A. .
DEVELOPMENTAL CELL, 2022, 57 (14) :1776-+
[8]   Biomolecular condensates: organizers of cellular biochemistry [J].
Banani, Salman F. ;
Lee, Hyun O. ;
Hyman, Anthony A. ;
Rosen, Michael K. .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2017, 18 (05) :285-298
[9]   A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates [J].
Bashkirov, VI ;
Scherthan, H ;
Solinger, JA ;
Buerstedde, JM ;
Heyer, WD .
JOURNAL OF CELL BIOLOGY, 1997, 136 (04) :761-773
[10]   Nuclear Stress Bodies [J].
Biamonti, Giuseppe ;
Vourc'h, Claire .
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY, 2010, 2 (06) :a000695