Early Alzheimer's disease pathology in human cortex involves transient cell states

被引:85
作者
Gazestani, Vahid [1 ]
Kamath, Tushar [1 ,2 ]
Nadaf, Naeem M. [1 ]
Dougalis, Antonios [3 ]
Burris, S. J.
Rooney, Brendan
Junkkari, Antti [5 ,6 ]
Vanderburg, Charles [1 ]
Pelkonen, Anssi [3 ]
Gomez-Budia, Mireia [3 ]
Valimaki, Nelli-Noora [3 ]
Rauramaa, Tuomas [5 ,7 ]
Therrien, Martine [1 ]
Koivisto, Anne M. [4 ,5 ,8 ,9 ,10 ]
Tegtmeyer, Matthew [1 ]
Herukka, Sanna-Kaisa [5 ,8 ]
Abdulraouf, Abdulraouf [1 ]
Marsh, Samuel E.
Hiltunen, Mikko [12 ]
Nehme, Ralda [1 ]
Malm, Tarja
Stevens, Beth [1 ,11 ,13 ]
Leinonen, Ville [5 ,6 ]
Macosko, Evan Z. [1 ,14 ]
机构
[1] Broad Inst & Harvard, Cambridge, MA 02142 USA
[2] Harvard Univ, Harvard Grad Program Biophys & Harvard, MD PhD Program, Cambridge, MA 02139 USA
[3] Univ Eastern Finland, AI Virtanen Inst Mol Sci, Kuopio, Finland
[4] Harvard Med Sch, Program Neurosci, Boston, MA 02115 USA
[5] Univ Eastern Finland, Inst Clin Med, Kuopio, Finland
[6] Kuopio Univ Hosp, Dept Neurosurg, Kuopio, Finland
[7] Kuopio Univ Hosp, Dept Pathol, Kuopio, Finland
[8] Kuopio Univ Hosp, Dept Neurol, FIN-70211 Kuopio, Finland
[9] Univ Helsinki, Dept Neurosci, Helsinki, Finland
[10] Helsinki Univ Hosp, Dept Geriatr, Helsinki, Finland
[11] Boston Childrens Hosp, FM Kirby Neurobiol Ctr, Boston, MA 02115 USA
[12] Univ Eastern Finland, Inst Biomed, Kuopio, Finland
[13] Howard Hughes Med Inst HHMI, Boston, MA 02115 USA
[14] Massachusetts Gen Hosp, Dept Psychiat, Boston, MA 02114 USA
基金
芬兰科学院;
关键词
NORMAL-PRESSURE HYDROCEPHALUS; RISK LOCI; RNA-SEQ; BRAIN; NEURONS; MOUSE; ATLAS; DEATH; INDIVIDUALS; MODULATION;
D O I
10.1016/j.cell.2023.08.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Cellular perturbations underlying Alzheimer's disease (AD) are primarily studied in human postmortem samples and model organisms. Here, we generated a single-nucleus atlas from a rare cohort of cortical biopsies from living individuals with varying degrees of AD pathology. We next performed a systematic cross-disease and cross-species integrative analysis to identify a set of cell states that are specific to early AD pathology. These changes-which we refer to as the early cortical amyloid response-were prominent in neurons, wherein we identified a transitional hyperactive state preceding the loss of excitatory neurons, which we confirmed by acute slice physiology on independent biopsy specimens. Microglia overexpressing neuroin-flammatory-related processes also expanded as AD pathology increased. Finally, both oligodendrocytes and pyramidal neurons upregulated genes associated with b-amyloid production and processing during this early hyperactive phase. Our integrative analysis provides an organizing framework for targeting circuit dysfunction, neuroinflammation, and amyloid production early in AD pathogenesis.
引用
收藏
页码:4438 / +
页数:40
相关论文
共 120 条
[1]   Learning-Related Plasticity in Dendrite-Targeting Layer 1 Interneurons [J].
Abs, Elisabeth ;
Poorthuis, Rogier B. ;
Apelblat, Daniella ;
Muhammad, Karzan ;
Pardi, M. Belen ;
Enke, Leona ;
Kushinsky, Dahlia ;
Pu, De-Lin ;
Eizinger, Max Ferdinand ;
Conzelmann, Karl-Klaus ;
Spiegel, Ivo ;
Letzkus, Johannes J. .
NEURON, 2018, 100 (03) :684-+
[2]   Cell-type-specific metabolic labeling, detection and identification of nascent proteomes in vivo [J].
Alvarez-Castelao, Beatriz ;
Schanzenbaecher, Christoph T. ;
Langer, Julian D. ;
Schuman, Erin M. .
NATURE PROTOCOLS, 2019, 14 (02) :556-575
[3]   Julich-Brain: A 3D probabilistic atlas of the human brain's cytoarchitecture [J].
Amunts, Katrin ;
Mohlberg, Hartmut ;
Bludau, Sebastian ;
Zilles, Karl .
SCIENCE, 2020, 369 (6506) :988-+
[4]   Comparative cellular analysis of motor cortex in human, marmoset and mouse [J].
Bakken, Trygve E. ;
Jorstad, Nikolas L. ;
Hu, Qiwen ;
Lake, Blue B. ;
Tian, Wei ;
Kalmbach, Brian E. ;
Crow, Megan ;
Hodge, Rebecca D. ;
Krienen, Fenna M. ;
Sorensen, Staci A. ;
Eggermont, Jeroen ;
Yao, Zizhen ;
Aevermann, Brian D. ;
Aldridge, Andrew I. ;
Bartlett, Anna ;
Bertagnolli, Darren ;
Casper, Tamara ;
Castanon, Rosa G. ;
Crichton, Kirsten ;
Daigle, Tanya L. ;
Dalley, Rachel ;
Dee, Nick ;
Dembrow, Nikolai ;
Diep, Dinh ;
Ding, Song-Lin ;
Dong, Weixiu ;
Fang, Rongxin ;
Fischer, Stephan ;
Goldman, Melissa ;
Goldy, Jeff ;
Graybuck, Lucas T. ;
Herb, Brian R. ;
Hou, Xiaomeng ;
Kancherla, Jayaram ;
Kroll, Matthew ;
Lathia, Kanan ;
van Lew, Baldur ;
Li, Yang Eric ;
Liu, Christine S. ;
Liu, Hanqing ;
Lucero, Jacinta D. ;
Mahurkar, Anup ;
McMillen, Delissa ;
Miller, Jeremy A. ;
Moussa, Marmar ;
Nery, Joseph R. ;
Nicovich, Philip R. ;
Niu, Sheng-Yong ;
Orvis, Joshua ;
Osteen, Julia K. .
NATURE, 2021, 598 (7879) :111-+
[5]   Human brain myelination and amyloid beta deposition in Alzheimer's disease [J].
Bartzokis, George ;
Lu, Po H. ;
Mintz, Jim .
ALZHEIMERS & DEMENTIA, 2007, 3 (02) :122-125
[6]   Clinical and Biomarker Changes in Dominantly Inherited Alzheimer's Disease [J].
Bateman, Randall J. ;
Xiong, Chengjie ;
Benzinger, Tammie L. S. ;
Fagan, Anne M. ;
Goate, Alison ;
Fox, Nick C. ;
Marcus, Daniel S. ;
Cairns, Nigel J. ;
Xie, Xianyun ;
Blazey, Tyler M. ;
Holtzman, David M. ;
Santacruz, Anna ;
Buckles, Virginia ;
Oliver, Angela ;
Moulder, Krista ;
Aisen, Paul S. ;
Ghetti, Bernardino ;
Klunk, William E. ;
McDade, Eric ;
Martins, Ralph N. ;
Masters, Colin L. ;
Mayeux, Richard ;
Ringman, John M. ;
Rossor, Martin N. ;
Schofield, Peter R. ;
Sperling, Reisa A. ;
Salloway, Stephen ;
Morris, John C. .
NEW ENGLAND JOURNAL OF MEDICINE, 2012, 367 (09) :795-804
[7]   New insights into the genetic etiology of Alzheimer's disease and related dementias [J].
Bellenguez, Celine ;
Kucukali, Fahri ;
Jansen, Iris E. ;
Kleineidam, Luca ;
Moreno-Grau, Sonia ;
Amin, Najaf ;
Naj, Adam C. ;
Campos-Martin, Rafael ;
Grenier-Boley, Benjamin ;
Andrade, Victor ;
Holmans, Peter A. ;
Boland, Anne ;
Damotte, Vincent ;
van der Lee, Sven J. ;
Costa, Marcos R. ;
Kuulasmaa, Teemu ;
Yang, Qiong ;
De Rojas, Itziar ;
Bis, Joshua C. ;
Yaqub, Amber ;
Prokic, Ivana ;
Chapuis, Julien ;
Ahmad, Shahzad ;
Giedraitis, Vilmantas ;
Aarsland, Dag ;
Garcia-Gonzalez, Pablo ;
Abdelnour, Carla ;
Alarcon-Martin, Emilio ;
Alcolea, Daniel ;
Alegret, Montserrat ;
Alvarez, Ignacio ;
Alvarez, Victoria ;
Armstrong, Nicola J. ;
Tsolaki, Anthoula ;
Antunez, Carmen ;
Appollonio, Ildebrando ;
Arcaro, Marina ;
Archetti, Silvana ;
Arias Pastor, Alfonso ;
Arosio, Beatrice ;
Athanasiu, Lavinia ;
Bailly, Henri ;
Banaj, Nerisa ;
Baquero, Miquel ;
Barral, Sandra ;
Beiser, Alexa ;
Pastor, Ana Belen ;
Below, Jennifer E. ;
Benchek, Penelope ;
Benussi, Luisa .
NATURE GENETICS, 2022, 54 (04) :412-436
[8]   Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction [J].
Bhattacherjee, Aritra ;
Djekidel, Mohamed Nadhir ;
Chen, Renchao ;
Chen, Wenqiang ;
Tuesta, Luis M. ;
Zhang, Yi .
NATURE COMMUNICATIONS, 2019, 10 (1)
[9]   Mouse Genome Database (MGD): Knowledgebase for mouse-human comparative biology [J].
Blake, Judith A. ;
Baldarelli, Richard ;
Kadin, James A. ;
Richardson, Joel E. ;
Smith, Cynthia L. ;
Bult, Carol J. .
NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) :D981-D987
[10]   Layer-specific high-frequency action potential spiking in the prefrontal cortex of awake rats [J].
Boudewijns, Zimbo S. R. M. ;
Groen, Martine R. ;
Lodder, Brendan ;
McMaster, Minni T. B. ;
Kalogreades, Lawrence ;
de Haan, Roel ;
Narayanan, Rajeevan T. ;
Meredith, Rhiannon M. ;
Mansvelderand, Huibert D. ;
de Kock, Christiaan P. J. .
FRONTIERS IN CELLULAR NEUROSCIENCE, 2013, 7