Multi-omics Approach in Kidney Transplant: Lessons Learned from COVID-19 Pandemic

被引:1
作者
Mizuno, Hiroki [1 ,2 ]
Murakami, Naoka [1 ]
机构
[1] Harvard Med Sch, Brigham & Womens Hosp, Transplant Res Ctr, Div Renal Med, 221 Longwood Ave EBRC 305, Boston, MA 02115 USA
[2] Toranomon Gen Hosp, Dvis Nephrol & Rheumatol, Tokyo, Japan
关键词
COVID-19; Kidney transplant; Immunology; Multi-omics; Gene expression; Vaccination; ANTIBODY-MEDIATED REJECTION; RENAL-ALLOGRAFT REJECTION; MACHINE PERFUSION; GENE SIGNATURE; HUMAN SERUM; IDENTIFICATION; BIOMARKERS; TOLERANCE; PATHWAYS; PLASMA;
D O I
10.1007/s40472-023-00410-8
中图分类号
R61 [外科手术学];
学科分类号
摘要
Purpose of ReviewMulti-omics approach has advanced our knowledge on transplantation-associated clinical outcomes, such as acute rejection and infection, and emerging omics data are becoming available in kidney transplant and COVID-19. Herein, we discuss updated findings of multi-omics data on kidney transplant outcomes, as well as COVID-19 and kidney transplant.Recent FindingsTranscriptomics, proteomics, and metabolomics revealed various inflammation pathways associated with kidney transplantation-related outcomes and COVID-19. Although multi-omics data on kidney transplant and COVID-19 is limited, activation of innate immune pathways and suppression of adaptive immune pathways were observed in the active phase of COVID-19 in kidney transplant recipients.SummaryMulti-omics analysis has led us to a deeper exploration and a more comprehensive understanding of key biological pathways in complex clinical settings, such as kidney transplantation and COVID-19. Future multi-omics analysis leveraging multi-center biobank collaborative will further advance our knowledge on the precise immunological responses to allograft and emerging pathogens.
引用
收藏
页码:173 / 187
页数:15
相关论文
共 109 条
  • [1] Who wants his dose?
    不详
    [J]. EXERCER-LA REVUE FRANCOPHONE DE MEDECINE GENERALE, 2023, (193): : 239 - 240
  • [2] Multicenter Clinicopathologic Correlation of Kidney Biopsies Performed in COVID-19 Patients Presenting With Acute Kidney Injury or Proteinuria
    Akilesh, Shreeram
    Nast, Cynthia C.
    Yamashita, Michifumi
    Henriksen, Kammi
    Charu, Vivek
    Troxell, Megan L.
    Kambham, Neeraja
    Bracamonte, Erika
    Houghton, Donald
    Ahmed, Naila, I
    Chong, Chyi Chyi
    Thajudeen, Bijin
    Rehman, Shehzad
    Khoury, Firas
    Zuckerman, Jonathan E.
    Gitomer, Jeremy
    Raguram, Parthassarathy C.
    Mujeeb, Shanza
    Schwarze, Ulrike
    Shannon, M. Brendan
    De Castro, Iris
    Alpers, Charles E.
    Najafian, Behzad
    Nicosia, Roberto F.
    Andeen, Nicole K.
    Smith, Kelly D.
    [J]. AMERICAN JOURNAL OF KIDNEY DISEASES, 2021, 77 (01) : 82 - +
  • [3] Acute Kidney Injury in Severe COVID-19 Has Similarities to Sepsis-Associated Kidney Injury: A Multi-Omics Study
    Alexander, Mariam P.
    Mangalaparthi, Kiran K.
    Madugundu, Anil K.
    Moyer, Ann M.
    Adam, Benjamin A.
    Mengel, Michael
    Singh, Smrita
    Herrmann, Sandra M.
    Rule, Andrew D.
    Cheek, E. Heidi
    Hernandez, Loren P. Herrera
    Graham, Rondell P.
    Aleksandar, Denic
    Aubry, Marie-Christine
    Roden, Anja C.
    Hagen, Catherine E.
    Quinton, Reade A.
    Bois, Melanie C.
    Lin, Peter T.
    Maleszewski, Joseph J.
    Cornell, Lynn D.
    Sethi, Sanjeev
    Pavelko, Kevin D.
    Charlesworth, Jon
    Narasimhan, Ramya
    Larsen, Christopher P.
    Rizza, Stacey A.
    Nasr, Samih H.
    Grande, Joseph P.
    McKee, Trevor D.
    Badley, Andrew D.
    Pandey, Akhilesh
    Taner, Timucin
    [J]. MAYO CLINIC PROCEEDINGS, 2021, 96 (10) : 2561 - 2575
  • [4] Computational Prediction of Biomarkers, Pathways, and New Target Drugs in the Pathogenesis of Immune-Based Diseases Regarding Kidney Transplantation Rejection
    Alfaro, Rafael
    Martinez-Banaclocha, Helios
    Llorente, Santiago
    Jimenez-Coll, Victor
    Galian, Jose Antonio
    Botella, Carmen
    Moya-Quiles, Maria Rosa
    Parrado, Antonio
    Muro-Perez, Manuel
    Minguela, Alfredo
    Legaz, Isabel
    Muro, Manuel
    [J]. FRONTIERS IN IMMUNOLOGY, 2021, 12
  • [5] Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity
    Ambikan, Anoop T.
    Yang, Hong
    Krishnan, Shuba
    Akusjarvi, Sara Svensson
    Gupta, Soham
    Lourda, Magda
    Sperk, Maike
    Arif, Muhammad
    Zhang, Chenq
    Nordqvist, Hampus
    Ponnan, Sivasankaran Munusamy
    Sonnerborg, Anders
    Treutiger, Carl Johan
    O'Mahony, Liam
    Mardinoglu, Adil
    Benfeitas, Rui
    Neogi, Ujjwal
    [J]. CELL SYSTEMS, 2022, 13 (08) : 665 - +
  • [6] [Anonymous], Full article: a ferroptosis-related gene signature for graft loss prediction following renal allograft, DOI [10.1080/21655979.2021.1953310, DOI 10.1080/21655979.2021.1953310]
  • [7] [Anonymous], Targeted metabolomic analysis of 33 amino acids and biogenic amines in human urine by ion-pairing HPLC-MS/MS: biomarkers for tacrolimus nephrotoxicity after renal transplantation-Xia-2018-Biomedical Chromatography-Wiley Online Library, DOI [10.1002/bmc.4198, DOI 10.1002/BMC.4198]
  • [8] [Anonymous], Presenting characteristics, comorbidities, and outcomes among 5700 patients hospitalized with COVID-19 in the New York City area | Critical Care Medicine | JAMA | JAMA Network
  • [9] Pretransplant kidney transcriptome captures intrinsic donor organ quality and predicts 24-month outcomes
    Archer, Kellie J.
    Bardhi, Elissa
    Maluf, Daniel G.
    McDaniels, Jennifer
    Rousselle, Thomas
    King, Anne
    Eason, James D.
    Gallon, Lorenzo
    Akalin, Enver
    Mueller, Thomas F.
    Mas, Valeria R.
    [J]. AMERICAN JOURNAL OF TRANSPLANTATION, 2022, 22 (11) : 2515 - 2528
  • [10] Inpatient COVID-19 outcomes in solid organ transplant recipients compared to non-solid organ transplant patients: A retrospective cohort
    Avery, Robin K.
    Chiang, Teresa Po-Yu
    Marr, Kieren A.
    Brennan, Daniel C.
    Sait, Afrah S.
    Garibaldi, Brian T.
    Shah, Pali
    Ostrander, Darin
    Steinke, Seema Mehta
    Permpalung, Nitipong
    Cochran, Willa
    Makary, Martin A.
    Garonzik-Wang, Jacqueline
    Segev, Dorry L.
    Massie, Allan B.
    [J]. AMERICAN JOURNAL OF TRANSPLANTATION, 2021, 21 (07) : 2498 - 2508