Multiple genome sequences of lactic acid bacteria, Carnobacterium divergens and Carnobacterium maltaromaticum strains, isolated from vacuum-packaged lamb meat

被引:1
作者
Palevich, Faith [1 ]
Gardner, Amanda [1 ]
Ross, Colleen [1 ]
Mills, John [1 ]
Brightwell, Gale [1 ]
Palevich, Nikola [2 ]
机构
[1] AgResearch Ltd, Hopkirk Res Inst, Food Syst Integr, Palmerston North, New Zealand
[2] AgResearch Ltd, Grasslands Res Ctr, Rumen Microbiol, Palmerston North, New Zealand
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2024年 / 13卷 / 02期
关键词
Carnobacterium; lactic acid bacteria; genomes; MICROBIAL GENOMES; PISCICOLA;
D O I
10.1128/mra.01058-23
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Here, we report the whole-genome sequences of 11 Carnobacterium divergens and 2 Carnobacterium maltaromaticum bacteria isolated from vacuum-packed chill-stored lamb meat in New Zealand. Examination of these lactic acid bacteria (LAB) genomes will improve our knowledge of their potential antimicrobial activities and spoilage mechanisms of importance to the meat industry.
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页数:4
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共 19 条
[1]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[2]   Bacteriocins of lactic acid bacteria: extending the family [J].
Alvarez-Sieiro, Patricia ;
Montalban-Lopez, Manuel ;
Mu, Dongdong ;
Kuipers, Oscar P. .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2016, 100 (07) :2939-2951
[3]   antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation [J].
Blin, Kai ;
Shaw, Simon ;
Augustijn, Hannah E. ;
Reitz, Zachary L. ;
Biermann, Friederike ;
Alanjary, Mohammad ;
Fetter, Artem ;
Terlouw, Barbara R. ;
Metcalf, William W. ;
Helfrich, Eric J. N. ;
van Wezel, Gilles P. ;
Medema, Marnix H. ;
Weber, Tilmann .
NUCLEIC ACIDS RESEARCH, 2023, 51 (W1) :W46-W50
[4]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[5]   Using average nucleotide identity to improve taxonomic assignments in prokaryotic genomes at the NCBI [J].
Ciufo, Stacy ;
Kannan, Sivakumar ;
Sharma, Shobha ;
Badretdin, Azat ;
Clark, Karen ;
Turner, Sean ;
Brover, Slava ;
Schoch, Conrad L. ;
Kimchi, Avi ;
DiCuccio, Michael .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2018, 68 (07) :2386-2392
[6]   A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data [J].
Coil, David ;
Jospin, Guillaume ;
Darling, Aaron E. .
BIOINFORMATICS, 2015, 31 (04) :587-589
[7]   CLASSIFICATION OF LACTOBACILLUS-DIVERGENS, LACTOBACILLUS-PISCICOLA, AND SOME CATALASE-NEGATIVE, ASPOROGENOUS, ROD-SHAPED BACTERIA FROM POULTRY IN A NEW GENUS, CARNOBACTERIUM [J].
COLLINS, MD ;
FARROW, JAE ;
PHILLIPS, BA ;
FERUSU, S ;
JONES, D .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1987, 37 (04) :310-316
[8]   Carnobacterium divergens and Carnobacterium maltaromaticum as spoilers or protective cultures in meat and seafood:: phenotypic and genotypic characterization [J].
Laursen, BG ;
Bay, L ;
Cleenwerck, I ;
Vancanneyt, M ;
Swings, J ;
Dalgaard, P ;
Leisner, JJ .
SYSTEMATIC AND APPLIED MICROBIOLOGY, 2005, 28 (02) :151-164
[9]   Carnobacterium:: positive and negative effects in the environment and in foods [J].
Leisner, Jorgen J. ;
Laursen, Birgit Groth ;
Prevost, Herve ;
Drider, Djamel ;
Dalgaard, Paw .
FEMS MICROBIOLOGY REVIEWS, 2007, 31 (05) :592-613
[10]   TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy [J].
Meier-Kolthoff, Jan P. ;
Goeker, Markus .
NATURE COMMUNICATIONS, 2019, 10 (1)