Network pharmacology and bioinformatics to identify the molecular mechanisms of Gleditsiae Spina against colorectal cancer

被引:5
|
作者
Wu, Yingzi [1 ,2 ,3 ]
Luo, Jinhai [1 ,2 ,3 ]
Xu, Baojun [1 ,2 ,4 ]
机构
[1] Guangdong Prov Key Lab IRADS, Zhuhai 519087, Peoples R China
[2] BNU HKBU United Int Coll, Dept Life Sci, Zhuhai 519087, Peoples R China
[3] Hong Kong Baptist Univ, Sch Chinese Med, Hong Kong, Peoples R China
[4] 2000 Jintong Rd, Zhuhai 519085, Guangdong, Peoples R China
来源
关键词
Gleditsiae Spina; Network pharmacology; Bioinformatics; Active phytochemicals; Colorectal cancer; Molecular docking; CELL-CYCLE ARREST; GENE-EXPRESSION; COLON-CANCER; APOPTOSIS; INHIBITION; PATHWAY; PROLIFERATION; SUPPRESSES; ACTIVATION; QUERCETIN;
D O I
10.1016/j.crtox.2023.100139
中图分类号
R99 [毒物学(毒理学)];
学科分类号
100405 ;
摘要
Objective: In this study, network pharmacology, bioinformatics and molecular docking were used to explore the active phytochemicals, hub genes, and potential molecular mechanisms of Gleditsiae Spina in treating of colo-rectal cancer..Methods: The targets of Gleditsiae Spina, and targets related to CRC were derived from databases. We identified the hub genes for Gleditsiae Spina anti-colorectal cancer following the protein-protein-interaction (PPI) network. Furthermore, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment were used to analyze the hub genes from a macro perspective. Finally, we verified the hub genes by molecular docking, GEPIA, HPA, and starBase database.Results: We identified nine active phytochemicals and 36 intersection targets. The GO enrichment analysis results showed that Gleditsiae Spina may be involved in gene targets affecting multiple biological processes, including response to radiation, response to ionizing radiation, cyclin-dependent protein kinase holoenzyme complex, serine/threonine protein kinase complex, cyclin-dependent protein serine/threonine kinase regulator activity and protein kinase regulator activity. KEGG enrichment analysis results indicated that the P53 signaling pathway, IL-17 signaling pathway, Toll-like receptor signaling pathway, PI3K-Akt signaling pathway, and JAK-STAT signaling pathway were mainly related to the effect of Gleditsiae Spina on colorectal cancer. Molecular docking analysis suggested that the active phytochemicals of Gleditsiae Spina could combine well with hub genes (PTGS1, PIK3CG, CCND1, CXCL8 and ADRB2).Conclusion: This study provides clues for further study of anti-CRC phytochemicals as well as their mechanisms of provides a basis for their development model.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] Exploring the therapeutic mechanisms of Gleditsiae Spina acting on pancreatic cancer via network pharmacology, molecular docking and molecular dynamics simulation
    Duan, Hongtao
    Zhang, Rui
    Yuan, Lu
    Liu, Yiyuan
    Asikaer, Aiminuer
    Liu, Yang
    Shen, Yan
    RSC ADVANCES, 2023, 13 (20) : 13971 - 13984
  • [2] Network Pharmacology and Bioinformatics Analysis to Identify the Molecular Targets and its Biological Mechanisms of Sciadopitysin against Glioblastoma
    Lian, Haiwei
    Xiong, Yajie
    Zhao, Guojie
    Yi, Meng
    Wang, Jingchao
    Liu, Huimin
    Zhou, Yun
    JOURNAL OF CANCER, 2024, 15 (12): : 3675 - 3683
  • [3] Elucidating the molecular mechanisms of pterostilbene against cervical cancer through an integrated bioinformatics and network pharmacology approach
    Li, Xiang
    Yu, Dequan
    Wang, Qiming
    Chen, Yating
    Jiang, Hanbing
    CHEMICO-BIOLOGICAL INTERACTIONS, 2024, 396
  • [4] Molecular Mechanism of Gleditsiae Spina for the Treatment of High-Grade Serous Ovarian Cancer Based on Network Pharmacology and Pharmacological Experiments
    Zhang, Boran
    Dan, Wenchao
    Zhang, Ganlin
    Wang, Xiaomin
    BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [5] Network Pharmacology and Molecular Docking Validation to Reveal the Pharmacological Mechanisms of Kangai Injection against Colorectal Cancer
    Zheng, Bo-Bo
    Wang, Quan
    Yue, Yumin
    Li, Jiang
    Li, Xiao-Jun
    Wang, Xin
    BIOMED RESEARCH INTERNATIONAL, 2022, 2022
  • [6] Network pharmacology and bioinformatics to identify molecular mechanisms and therapeutic targets of Ruyi Jinhuang Powder in the treatment of monkeypox
    Zhang, Xi
    Yu, Xinping
    Yu, Zhichao
    Fan, Chengcheng
    Li, Yueming
    Li, Huan
    Shen, Yingkai
    Sun, Zijin
    Zhang, Shuo
    MEDICINE, 2023, 102 (17) : E33576
  • [7] Integrated bioinformatics and network pharmacology to identify the therapeutic target and molecular mechanisms of Huangqin decoction on ulcerative Colitis
    Wu, Yi
    Liu, Xinqiao
    Li, Guiwei
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [8] Integrated bioinformatics and network pharmacology to identify the therapeutic target and molecular mechanisms of Huangqin decoction on ulcerative Colitis
    Yi Wu
    Xinqiao Liu
    Guiwei Li
    Scientific Reports, 12
  • [9] A network pharmacology approach to identify the mechanisms and molecular targets of curcumin against Alzheimer disease
    Wu, Xinyan
    Zheng, Xiaomei
    Tang, Huaqiao
    Zhao, Ling
    He, Changliang
    Zou, Yuanfeng
    Song, Xu
    Li, Lixia
    Yin, Zhongqiong
    Ye, Gang
    MEDICINE, 2022, 101 (34) : E30194
  • [10] Network Pharmacology and Bioinformatics Study of Six Medicinal Food Homologous Plants Against Colorectal Cancer
    Zhao, Xinyue
    Xiu, Jian
    Yang, Hengzheng
    Han, Weiwei
    Jin, Yue
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2025, 26 (03)