Synthesis, single crystal, TD-DFT, molecular dynamics simulation and DNA binding studies of carbothioamide analog

被引:22
作者
Rana, Manish [1 ]
Ahmedi, Saiema [2 ]
Fatima, Aysha [3 ]
Ahmad, Shaban [4 ]
Nouman, Khalid
Siddiqui, Nazia [5 ]
Raza, Khalid [4 ]
Manzoor, Nikhat [2 ]
Javed, Saleem [6 ]
Rahisuddin [1 ]
机构
[1] Jamia Millia Islamia, Dept Chem, Mol & Biophys Res Lab MBRL, New Delhi 110025, India
[2] Jamia Millia Islamia, Dept Biosci, New Delhi 110025, India
[3] Jiwaji Univ, SOS Chem, Gwalior 474011, Madhya Pradesh, India
[4] Jamia Millia Islamia, Dept Comp Sci, New Delhi 110025, India
[5] USIC, Dayalbagh Educ Inst Agra, Agra 282005, Uttar Pradesh, India
[6] Jamia Millia Islamia, Dept Chem, New Delhi 110025, India
关键词
Antifungal; DNA; TD-DFT; MD simulation; THIAZOLYL-PYRAZOLINE DERIVATIVES; ANTIFUNGAL ACTIVITY; LANOSTEROL; 14-ALPHA-DEMETHYLASE; FT-RAMAN; DOCKING; ANTIOXIDANT; COMPLEXES; MECHANISM; DRUG; INHIBITORS;
D O I
10.1016/j.molstruc.2023.135701
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In this work, analog 3b (5-(4-(dimethylamino) phenyl)-3-(4-methoxyphenyl)-4,5-dihydro-1H-pyrazole-1-carbothioamide) of pyrazoline derivative was produced based on the active site (CYP51) analysis. To eluci-date its molecular structure, various techniques including FT-IR, UV-visible, NMR, mass spectrometry and X-ray crystallography were utilised. The bond lengths and bond angles occur in monoclinic with P21/n space group for 3b, and z = 8 corresponds to compound 3b, and the lattice parameters show, a = 14.5480(14) angstrom, b = 17.0119 (17) angstrom, c = 14.6257(14) angstrom, alpha = 90, beta = 98.646(3), gamma= 90 per unit cell. Analog 3b also showed significant antifungal activity against candida strains, C. albicans, C. glabrata, and C. tropicalis and molecular docking per-formed at the active site of 14-alpha demethylase, and an estimated ADME assay was calculated. In addition, simulation of the CYP51 protein-ligand complexes at a time scale of 100 ns showed that the mean RMSD is 0.31 nm. According to the simulation and MMGBSA data, protein-ligand complexes are stable and exhibit stable interactions up to 100 ns of simulation time. The DNA binding was revealed by using UV-vis, fluorescence and cyclic voltammetry measurements. TD-DFT calculation was used to study several computational structural characteristics of molecule. We also used Hirshfeld surface analysis (HSA), FTIR, UV-Vis. and NMR spectra to compare the structural features of theoretical and experimental findings of the molecule 3b. The comprehensive in-silico and experimental study confirm the synthesised pyrazoline analog's antifungal, antioxidant, and DNA binding properties.
引用
收藏
页数:13
相关论文
共 74 条
[1]   DFT, molecular docking and experimental FT-IR, FT-Raman, NMR inquisitions on "4-chloro-N-(4,5-dihydro-1H-imidazol-2-yl)-6-methoxy-2-methylpyrimidin-5-amine": Alpha-2-imidazoline receptor agonist antihypertensive agent [J].
Aayisha, S. ;
Devi, T. S. Renuga ;
Janani, S. ;
Muthu, S. ;
Raja, M. ;
Sevvanthi, S. .
JOURNAL OF MOLECULAR STRUCTURE, 2019, 1186 :468-481
[2]   Evolution of ergosterol biosynthesis inhibitors as fungicidal against Candida [J].
Ahmad, Aijaz ;
Khan, Amber ;
Manzoor, Nikhat ;
Khan, Luqman A. .
MICROBIAL PATHOGENESIS, 2010, 48 (01) :35-41
[3]   Regioselective [3+2] cycloaddition synthesis and theoretical calculations of new chromene-pyrazole hybrids: A DFT-based Parr Function, Fukui Function, local reactivity indexes, and MEP analysis [J].
Ahmed, Mohamed S. Mohamed ;
Mekky, Ahmed E. M. ;
Sanad, Sherif M. H. .
JOURNAL OF MOLECULAR STRUCTURE, 2022, 1267
[4]   Synthesis, spectroscopic studies and DFT/TD-DFT/PCM calculations of molecular structure, spectroscopic characterization and NBO of charge transfer complex between 5-amino-1,3-dimethylpyrazole (5-ADMP) with chloranilic acid (CLA) in different solvents [J].
Al-Ahmary, Khairia M. ;
Habeeb, Moustafa M. ;
Aljandali, Safaa H. .
JOURNAL OF MOLECULAR LIQUIDS, 2019, 277 :453-470
[5]   Novel Compounds Based on Chalcone- and Pyrazoline-DIM Hybrids as Inhibitors of S taphylococcus aureus, Synthesis, DFT Studies, Biological Evaluation and Docking Studies [J].
Alejandro Ibarra-Hernandez, Javier ;
Gomez-Balderas, Rodolfo ;
Nivon-Ramirez, Didier ;
Guadalupe Garcia-Estrada, Jose ;
Alberto Mendoza-Jimenez, David ;
Martinez-Zaldivar, Alejandro ;
Alejandro Cruz-Sanchez, Tonatiuh ;
Tovar-Betancourt, Nelly ;
Alfredo Luna-Mora, Ricardo ;
Guillermo Penieres-Carrillo, Jose .
JOURNAL OF MOLECULAR STRUCTURE, 2022, 1249
[6]   A novel series of thiazolyl-pyrazoline derivatives: Synthesis and evaluation of antifungal activity, cytotoxicity and genotoxicity [J].
Altintop, Mehlika Dilek ;
Ozdemir, Ahmet ;
Turan-Zitouni, Gulhan ;
Ilgm, Sinem ;
Atli, Ozlem ;
Demirel, Rasime ;
Kaplancikli, Zafer Asim .
EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2015, 92 :342-352
[7]   Homologous 1,3,5-triarylpyrazolines: synthesis, CH•••π interactions guided self-assembly and effect of alkyloxy chain length on DNA binding properties [J].
Anam, Faiza ;
Abbas, Asghar ;
Lo, Kong Mun ;
Zia-ur-Rehman ;
Hameed, Shahid ;
Naseer, Muhammad Moazzam .
NEW JOURNAL OF CHEMISTRY, 2014, 38 (11) :5617-5625
[8]   Design and synthesis of novel pyrazoline derivatives for their spectroscopic, single crystal X-ray and biological studies [J].
Asad, Mohammad ;
Khan, Salman A. ;
Arshad, Muhammad Nadeem ;
Asiri, Abdullah M. ;
Rehan, Mohd .
JOURNAL OF MOLECULAR STRUCTURE, 2021, 1234
[9]   Biological action of molecular adduct pyrazole: trichloroacetic acid on Candida albicans and ctDNA - A combined experimental, Fukui functions calculation and molecular docking analysis [J].
Balachandar, S. ;
Dhandapani, M. .
JOURNAL OF MOLECULAR STRUCTURE, 2019, 1184 :129-138
[10]   Spectroscopic and quantum/classical mechanics based computational studies to compare the ability of Andrographolide and its derivative to inhibit Nitric Oxide Synthase [J].
Ben Geoffrey, A. S. ;
Prasana, Johanan Christian ;
Muthu, S. ;
Abraham, Christina Susan ;
David, Host Antony .
SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2019, 218 :374-387